Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01611 ATGGCAGTGATGTCCCTAAGTTCATTACCCTTGGGGTTCAGATTTCGGCCTACGGACGAGGAGCTCGTTGATTTCTACCTACGCCTCAAGATAAATGGTAACGATGATGCAGTTAAGGTCATCCGTGAAATTGACGTCTGTAAATGGGAGCCTTGGGATTTACCTGATTTATCAGTCATACAGACAAAGGATCGAGAGTGGTTCTTCTTCTGTCCCCAGGACAGGAAGTATCCCAATGGACACCGCTTGAATCGTGCGACAAATCATGGGTATTGGAAGGCTACGGGTAAAGATCGAAGAATTAAGTCGGGTTCAACCTTGATTGGAATGAAGAAGACTCTGGTCTTCTACACTGGACGTGCACCAAAAGGGAAGAGAACTCATTGGGTTCTGCACGAATATCGTCCAACGCTTAAGGAGATGGATGGAACCAATCCTGGACAGAATCCTTTTGTCCTTCTCCGACTGTTCAAGAAGCAAGACGATAGTCTTGACTCTCCAAATTGTGAGGATCCTGAACAGACTGTTTCATCTCCAACCACAAGGTCTTCTCAAGAAGATTTACATTCTGATATGGCTGTTGCAGCAGTATCGCCATCATTGGGAGAAGATGAAAAGAATGTACAAATTGCATTTCGTAAAGATGAAGTTTATGAAGAAACGACATCCAATGATATCACCCATGTTGATCGTCACAGTGATGGATGTGATGTATATAAACAACAAGAACAAATGACTAAAGTTCCAGCTTCGCAGGTAAATCATATGTTAGCGGAGGACTTGAGAATGTTTGATGATCCAATGCCTGAGCCTTTGGATGGAACTATTTTTTCTCCAGTGCATTTTCAGATGAAATCTTGCATGTATTACCCTGCAAATAATTTTTCAGACAGTCACTTTGGCGTTCAACTTCAGTATGGCACAAATGAGGCTGATATTACGGATTTCTTAAATTCAATACTTAATTCTGAGGAATACTCCCGTGAGGAATCCAGTAGTGAGCATCAATTGCGTATTCAAAATGGAAAACCAAACGACTTGGTTTCTGTTAAGGACAATGCATCAGGGAGTGAATCTGATGTTGGTATGACAAACAAACTGTTTCCCTCAGACGTCCAACATCCTTTGTGGCCAGAAAAAGGTGTTGACAGAAAGGTCCCACCACCCATTCTGGAGACAAAACCGGAGCTTATGAGCAATGTTAATGCAAATCATTATCATGAAGAGAATGTACCAAATCTGGGAGTATTTTCAGATGAATTTAAGATTACTAATCCGGTATCTGGAGTTGATCTAGACCCACTCAACAGCTGGGTCAACCATCATGATGAATCATCTAGAAATTTTGCTAGCACGGCTGCGAACAATGGTGATGGTACTGGAATCAGGATAAGATCTAGACAAGTAGAAAACCACAAACCTAGAATTAATCATGTGACACAGGGTTTTGCACCAAGAAGAATACGCCTGCAGCAAAAACCTCAAGCATACCCTGGTCCTTCAGGTGATTCGTCTGCAAACCAAAGCATCAAAGGTGACAACATTGAACCATTTGATAATGAGGAGAGAGAGGTTTCTGAGAGGTTTGTCCCAGACGACGGTGTCAGTGATGCTGAATCTGGGTCTGAACCCCAGAAGAAAACTGAGCAAAACTATATTAGTCTAACTTCTAGCTCAGGTTCAAAAATAATGACTTGCAAGTCAAAGGGTGTTTCAGCTCTTTGCTCCACCTGGTTATACATTGTTGTGTTTGTAGTCATCGCCACCATGTCCATAGTCATTCCTAACATGATGTGA 1797 0.4213 MAVMSLSSLPLGFRFRPTDEELVDFYLRLKINGNDDAVKVIREIDVCKWEPWDLPDLSVIQTKDREWFFFCPQDRKYPNGHRLNRATNHGYWKATGKDRRIKSGSTLIGMKKTLVFYTGRAPKGKRTHWVLHEYRPTLKEMDGTNPGQNPFVLLRLFKKQDDSLDSPNCEDPEQTVSSPTTRSSQEDLHSDMAVAAVSPSLGEDEKNVQIAFRKDEVYEETTSNDITHVDRHSDGCDVYKQQEQMTKVPASQVNHMLAEDLRMFDDPMPEPLDGTIFSPVHFQMKSCMYYPANNFSDSHFGVQLQYGTNEADITDFLNSILNSEEYSREESSSEHQLRIQNGKPNDLVSVKDNASGSESDVGMTNKLFPSDVQHPLWPEKGVDRKVPPPILETKPELMSNVNANHYHEENVPNLGVFSDEFKITNPVSGVDLDPLNSWVNHHDESSRNFASTAANNGDGTGIRIRSRQVENHKPRINHVTQGFAPRRIRLQQKPQAYPGPSGDSSANQSIKGDNIEPFDNEEREVSERFVPDDGVSDAESGSEPQKKTEQNYISLTSSSGSKIMTCKSKGVSALCSTWLYIVVFVVIATMSIVIPNMM* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01611 598 FunFam Nac domain-containing protein 86 18 162 - -
Pte13g01611 598 MobiDBLite consensus disorder prediction 497 514 - -
Pte13g01611 598 MobiDBLite consensus disorder prediction 163 188 - -
Pte13g01611 598 SUPERFAMILY NAC domain 3 159 IPR036093 GO:0003677|GO:0006355
Pte13g01611 598 MobiDBLite consensus disorder prediction 337 364 - -
Pte13g01611 598 Gene3D NAC domain 18 163 IPR036093 GO:0003677|GO:0006355
Pte13g01611 598 MobiDBLite consensus disorder prediction 169 188 - -
Pte13g01611 598 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 223 - -
Pte13g01611 598 Pfam No apical meristem (NAM) protein 10 135 IPR003441 GO:0003677|GO:0006355
Pte13g01611 598 MobiDBLite consensus disorder prediction 466 552 - -
Pte13g01611 598 MobiDBLite consensus disorder prediction 515 544 - -
Pte13g01611 598 MobiDBLite consensus disorder prediction 327 364 - -
Pte13g01611 598 ProSiteProfiles NAC domain profile. 9 159 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01611 Pte-Chr13 28882237 28885692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01611 1 491 NAC Transcription Factor Family AT4G35580 39.530 8.53e-99 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte13g01611 NAM 2.4e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01611 - - qsa:O6P43_020031 524.242