Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01610 ATGAAGACCATTCTATCATCAGAGACAATGGATATTCCAGACGGAGTAAGTTTGAAGGTGAACGCTAAGGTGATCGAGGTTGAAGGTCCACGAGGCAAACTCACTCGCAACTTCAAGCATCTTAATCTTGATTTTGACCTTATTACTGATGCGGAAACCGGTAAGAGGAAGCTCAAGATTGATGCCTGGTTTGGATCTCGCAAGGCGTCTGCTGCAATTCGAACTGCTCTCAGTCACGTAGAGAATCTCATCACTGGTGTTACCAAGGGCTATCGCTACAAGATGAGGTTTGTTTATGCTCACTTCCCCATCAATGCTAGCATCACCAACGGTAGCAAGGCCATTGAAATCAGAAACTTCCTTGGTGAGAAGAAGGTAAGAAAAGTGGATATGCTTGAAGGGGTGGCTATCATTCGATCTGAGAAGGTTAAGGATGAGCTCATAGTTGAAGGAAATGACATTGAGCTTGTTTCTCGGTCCTGTGCTCTCATTAATCAGAAATGCCATGTGAAGAACAAAGATATCCGCAAGTTCTTGGATGGCATCTATGTTAGCGACAAGGGTAGAATAGTTGAAGAGGAATAG 585 0.4393 MKTILSSETMDIPDGVSLKVNAKVIEVEGPRGKLTRNFKHLNLDFDLITDAETGKRKLKIDAWFGSRKASAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKAIEIRNFLGEKKVRKVDMLEGVAIIRSEKVKDELIVEGNDIELVSRSCALINQKCHVKNKDIRKFLDGIYVSDKGRIVEEE* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01610 194 Gene3D - 1 90 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Pte13g01610 194 Gene3D - 91 194 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Pte13g01610 194 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 1 192 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Pte13g01610 194 SUPERFAMILY Ribosomal protein L6 1 90 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Pte13g01610 194 FunFam 60S ribosomal protein L9 91 194 - -
Pte13g01610 194 PIRSF RPL6p_RPL6a_RPL9e_RPL9o 1 190 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Pte13g01610 194 FunFam 60S ribosomal protein L9 1 90 - -
Pte13g01610 194 Pfam Ribosomal protein L6 12 90 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Pte13g01610 194 Pfam Ribosomal protein L6 105 181 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Pte13g01610 194 SUPERFAMILY Ribosomal protein L6 91 187 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Pte13g01610 194 ProSitePatterns Ribosomal protein L6 signature 2. 166 187 IPR002359 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01610 Pte-Chr13 28865525 28867791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01610 1 195 Cytoplasmic Ribosomal Protein Gene Family AT1G33140 82.051 8.14e-120 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01610 K02940 - qsu:112024691 353.599