LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte13g01552	ATGGGAGCATATGATCAAGGGTCTAACTTCGGTACTTCTCTATCGGGAATGACTAGAAAGAGAAAAAGAAGTAGAAGACGAGAGGGGTCTAAATCTGTAGCTGAGACTTTAGCACAGTGGAAAGCATACAATGAACATGTTGATGCTGGTACCGATAAGAGTAAAGCTACGCGTAAAGCTCCTGCCAAAGGTTCCAGAAAAGGTTGTATGAAAGGTAAAGGAGGGCCTGAGAATTCACTTTGCAACTACAGAGGCGTTAGGCAGAGGACATGGGGGAAATGGGTGGCTGAAATCAGAGCGCCAAATAGGGGAAATAGGCTATGGCTGGGTACTTTCCCTAACGCGGTTGAGGCTGCAGTTGCATATGATGAGGCTGCACGAGCTATGTATGGTGGTGCCGCTCGACTGAACTTCCCTGATGTCAAAGCTCGCAATTGGTGTAGGCAATCTTTGAAGGATGCATTTCCTAACACAGCCATTTCAGGCTCTTCATTTGCCACTTCGGTTGATTCAGTTTCAACTGGCATATCTGAGGTGTGTGAGGCTGAGGATATTATGAGGGTTGGCACAGCAGATGATGATGCTAGAGTTGGGGGAAACGAAGCCAACGAGTCGGAGTCCTGCTTTAGAGGGGAAGCTGTAGAAGCTGCAACACCTGATGGTGAAACTATCAAACAAGAGGTGAAAGAGGAGCTTGATGATGTTAAGGACTGTAGTCCTAGCACTGGCCAGGACTTAAAGGTGCATGAAAGTCATGGTGTTGAACGTGCCAATGATAATCAGCGTTGGGATGCAATGAATTTTGATTGGGATATGGGGGTTGATGATATGTTCCAAAACTTCTCTCAGGAGGAGATTTTTGATGTTCATGAACTTTTAGGTTGCATCGACAATGAACCTCTTGAGCCTCTTGTAGGCTCCTCTTGCGACAATCGACTGCATAGCGAATTCCCCTCTAGTTTATCATATCAGATGCAAAACCCAGATGCCAAACTTCTCGGCAGCTTGCAGCATATGGAGCAGACCCCGTCGAGTGTTGATTATGGCTTTGATTTCTTAAAAGCAATTGCCCATGAGAATGATAATGCCAGAGGGGATGAGCAGCAATATCTCATTTTTGGAGAGTTGTGA	1131	0.4589	MGAYDQGSNFGTSLSGMTRKRKRSRRREGSKSVAETLAQWKAYNEHVDAGTDKSKATRKAPAKGSRKGCMKGKGGPENSLCNYRGVRQRTWGKWVAEIRAPNRGNRLWLGTFPNAVEAAVAYDEAARAMYGGAARLNFPDVKARNWCRQSLKDAFPNTAISGSSFATSVDSVSTGISEVCEAEDIMRVGTADDDARVGGNEANESESCFRGEAVEAATPDGETIKQEVKEELDDVKDCSPSTGQDLKVHESHGVERANDNQRWDAMNFDWDMGVDDMFQNFSQEEIFDVHELLGCIDNEPLEPLVGSSCDNRLHSEFPSSLSYQMQNPDAKLLGSLQHMEQTPSSVDYGFDFLKAIAHENDNARGDEQQYLIFGEL*	377

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pte13g01552	376	MobiDBLite	consensus disorder prediction	1	74	-	-
Pte13g01552	376	Pfam	AP2 domain	81	131	IPR001471	GO:0003700\|GO:0006355
Pte13g01552	376	PRINTS	Ethylene responsive element binding protein signature	83	94	IPR001471	GO:0003700\|GO:0006355
Pte13g01552	376	PRINTS	Ethylene responsive element binding protein signature	105	121	IPR001471	GO:0003700\|GO:0006355
Pte13g01552	376	CDD	AP2	81	141	IPR001471	GO:0003700\|GO:0006355
Pte13g01552	376	MobiDBLite	consensus disorder prediction	1	17	-	-
Pte13g01552	376	SMART	rav1_2	82	145	IPR001471	GO:0003700\|GO:0006355
Pte13g01552	376	SUPERFAMILY	DNA-binding domain	82	140	IPR016177	GO:0003677
Pte13g01552	376	Gene3D	AP2/ERF domain	82	140	IPR036955	GO:0003700\|GO:0006355
Pte13g01552	376	ProSiteProfiles	AP2/ERF domain profile.	82	139	IPR001471	GO:0003700\|GO:0006355

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte13g01552	Pte-Chr13	28304102	28306567	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte13g01552	23	360	AP2-EREBP Transcription Factor Family	AT2G40340	38.150	6.23e-60	195

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Pte13g01552		AP2	1.1e-11	CL0081

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte13g01552	-		K09286	pcin:129294142	351.673

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