Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01552 ATGGGAGCATATGATCAAGGGTCTAACTTCGGTACTTCTCTATCGGGAATGACTAGAAAGAGAAAAAGAAGTAGAAGACGAGAGGGGTCTAAATCTGTAGCTGAGACTTTAGCACAGTGGAAAGCATACAATGAACATGTTGATGCTGGTACCGATAAGAGTAAAGCTACGCGTAAAGCTCCTGCCAAAGGTTCCAGAAAAGGTTGTATGAAAGGTAAAGGAGGGCCTGAGAATTCACTTTGCAACTACAGAGGCGTTAGGCAGAGGACATGGGGGAAATGGGTGGCTGAAATCAGAGCGCCAAATAGGGGAAATAGGCTATGGCTGGGTACTTTCCCTAACGCGGTTGAGGCTGCAGTTGCATATGATGAGGCTGCACGAGCTATGTATGGTGGTGCCGCTCGACTGAACTTCCCTGATGTCAAAGCTCGCAATTGGTGTAGGCAATCTTTGAAGGATGCATTTCCTAACACAGCCATTTCAGGCTCTTCATTTGCCACTTCGGTTGATTCAGTTTCAACTGGCATATCTGAGGTGTGTGAGGCTGAGGATATTATGAGGGTTGGCACAGCAGATGATGATGCTAGAGTTGGGGGAAACGAAGCCAACGAGTCGGAGTCCTGCTTTAGAGGGGAAGCTGTAGAAGCTGCAACACCTGATGGTGAAACTATCAAACAAGAGGTGAAAGAGGAGCTTGATGATGTTAAGGACTGTAGTCCTAGCACTGGCCAGGACTTAAAGGTGCATGAAAGTCATGGTGTTGAACGTGCCAATGATAATCAGCGTTGGGATGCAATGAATTTTGATTGGGATATGGGGGTTGATGATATGTTCCAAAACTTCTCTCAGGAGGAGATTTTTGATGTTCATGAACTTTTAGGTTGCATCGACAATGAACCTCTTGAGCCTCTTGTAGGCTCCTCTTGCGACAATCGACTGCATAGCGAATTCCCCTCTAGTTTATCATATCAGATGCAAAACCCAGATGCCAAACTTCTCGGCAGCTTGCAGCATATGGAGCAGACCCCGTCGAGTGTTGATTATGGCTTTGATTTCTTAAAAGCAATTGCCCATGAGAATGATAATGCCAGAGGGGATGAGCAGCAATATCTCATTTTTGGAGAGTTGTGA 1131 0.4589 MGAYDQGSNFGTSLSGMTRKRKRSRRREGSKSVAETLAQWKAYNEHVDAGTDKSKATRKAPAKGSRKGCMKGKGGPENSLCNYRGVRQRTWGKWVAEIRAPNRGNRLWLGTFPNAVEAAVAYDEAARAMYGGAARLNFPDVKARNWCRQSLKDAFPNTAISGSSFATSVDSVSTGISEVCEAEDIMRVGTADDDARVGGNEANESESCFRGEAVEAATPDGETIKQEVKEELDDVKDCSPSTGQDLKVHESHGVERANDNQRWDAMNFDWDMGVDDMFQNFSQEEIFDVHELLGCIDNEPLEPLVGSSCDNRLHSEFPSSLSYQMQNPDAKLLGSLQHMEQTPSSVDYGFDFLKAIAHENDNARGDEQQYLIFGEL* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01552 376 MobiDBLite consensus disorder prediction 1 74 - -
Pte13g01552 376 Pfam AP2 domain 81 131 IPR001471 GO:0003700|GO:0006355
Pte13g01552 376 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Pte13g01552 376 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Pte13g01552 376 CDD AP2 81 141 IPR001471 GO:0003700|GO:0006355
Pte13g01552 376 MobiDBLite consensus disorder prediction 1 17 - -
Pte13g01552 376 SMART rav1_2 82 145 IPR001471 GO:0003700|GO:0006355
Pte13g01552 376 SUPERFAMILY DNA-binding domain 82 140 IPR016177 GO:0003677
Pte13g01552 376 Gene3D AP2/ERF domain 82 140 IPR036955 GO:0003700|GO:0006355
Pte13g01552 376 ProSiteProfiles AP2/ERF domain profile. 82 139 IPR001471 GO:0003700|GO:0006355
Pte13g01552 376 MobiDBLite consensus disorder prediction 233 254 - -
Pte13g01552 376 FunFam Ethylene-responsive transcription factor 2 81 140 - -
Pte13g01552 376 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 17 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01552 Pte-Chr13 28304102 28306567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01552 23 360 AP2-EREBP Transcription Factor Family AT2G40340 38.150 6.23e-60 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte13g01552 AP2 1.1e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01552 - K09286 pcin:129294142 351.673