Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01549 ATGGGTGGAAACTCTCCATGCGCTTCATGCAAGTTGTTGAGACGCAGATGTGCCAAGGACTGCATCTTTGCTCCTTACTTCCCTTCCGATGATCCACACAAGTTTGCCATAGTTCACAAGGTTTTTGGCGCTAGCAATGTCAGCAAAATGTTGCAGGAACTTCAAGTTCATCAAAGAGCAGATGCTGTAAGCAGTCTAGTGTATGAAGCAAATGCAAGAATGAGAGACCCAGTTTACGGTTGCGTTGGAGCCATATCGTACCTGCAAAACCAAGTCTCTGAGCTCCAAATGCAGCTTGCAGTGGCTCAAGCAGAGATACTGTGCATCCAGATGCAGCAGGAGCCAGTGATGCCAGCTCCACAAATTCATGAGCCAGATGGAAAAGCATATTTTGTCAATAGCAACTTTCCTCAGTACTTAACTCTTCCATCTACTAGCGATGTGATCCATGATTCTCTCAAGAGAGAGAGCATTTTCGGTCATGACATGGTTTCTTAA 498 0.4538 MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELQVHQRADAVSSLVYEANARMRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQQEPVMPAPQIHEPDGKAYFVNSNFPQYLTLPSTSDVIHDSLKRESIFGHDMVS* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01549 165 Coils Coil 85 105 - -
Pte13g01549 165 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 117 - -
Pte13g01549 165 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Pte13g01549 165 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01549 Pte-Chr13 28243677 28244406 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01549 3 117 AS2 family AT2G30130 91.304 3.13e-75 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pte13g01549 LOB 1.5e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01549 - - cave:132186671 290.426