Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01548 ATGCTTGACAAGCTTGGTGGAGCATTTGCTCCCAAGCCCTCATCAGGACCTCGTAAATCAGAGGAGTGTCTTCCTCTTATCCTGATTCTGCGGAATTGGTTGAGATATGCTTTGACATATCGTGAGATGTTGTTTCAATCCCTAAAACAAATGAGAATTTCCGTCTTCTTTATGACACTAAAGGTTGTTTCCACCTTCACTCAATTAGGGATGAAGAAGCAAAGTTCAAGCTGTGCAAAGTCCGCTCAGTGCAATTTGGACAGAAAGGTATTCCATACTTGGAACACATATGACGGGTGTACCATCCGCTACCCTGACCCTCTCATTAGAGCAAACGACACCATCAAGCTGGATCTGGAGAGCAACAAAATCACTGAATTCATCAAGTTTGATGTGGGCAATGTAGTCATGGTTACTGGTAGAAGGAACAGAGGACGTGTTGGAGTGATCAAGAACAGGGAGAAACATAAGGGAAGTTTTGAGACCATTCACTTTGAGGATGCCACAGGCCACCAATTTGCTACGAGACCATTGGCAAAGGTACCAAGCCTTGGGTGA 558 0.4462 MLDKLGGAFAPKPSSGPRKSEECLPLILILRNWLRYALTYREMLFQSLKQMRISVFFMTLKVVSTFTQLGMKKQSSSCAKSAQCNLDRKVFHTWNTYDGCTIRYPDPLIRANDTIKLDLESNKITEFIKFDVGNVVMVTGRRNRGRVGVIKNREKHKGSFETIHFEDATGHQFATRPLAKVPSLG* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01548 185 MobiDBLite consensus disorder prediction 1 20 - -
Pte13g01548 185 Gene3D - 1 65 IPR036986 GO:0003723
Pte13g01548 185 Gene3D - 80 127 IPR038237 -
Pte13g01548 185 CDD KOW_RPS4 130 176 IPR041982 -
Pte13g01548 185 Gene3D - 130 179 IPR014722 -
Pte13g01548 185 Pfam Ribosomal family S4e 94 124 IPR013845 -
Pte13g01548 185 FunFam 40S ribosomal protein S4-3 130 168 - -
Pte13g01548 185 FunFam 40S ribosomal protein S4 78 127 - -
Pte13g01548 185 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 1 176 IPR000876 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01548 Pte-Chr13 28236131 28239109 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01548 1 185 Cytoplasmic Ribosomal Protein Gene Family AT5G07090 56.338 3.22e-72 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01548 K02987 - jre:108991861 199.519