Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01540 ATGGAGGCAAAAGAAAATGCAGCAGCAACAATCTTTAGCCTGTCCATTAGAGATGATTGTAAGATAACGATTGGAAGACATCCGAGGGCCATACCTGCATTGATTGGCCTCTTAAAGGAAGGCACTTCCATAGGTAAAAAGGATGCTGCGACGGCGCTTTTCAACCTTGCAGTTTACGATCCCAACAAAGCACGGATTGTCAGTGCAGGAGCAGTTGCTTTGCTAATTGACCTGTTGATAGATGAAAAGGCTGGGATAACAGATGATGCCTTGGGAGTGCTTGCTTTGCTTCAGGGTTGCCCTGATGAGCAGGAACAGATAAAATTGAGTAGTGCTTTGGTGCCTCTCCTTATTGATCTTTTAAGATTTGGGTCTCCTAAAGGAAAAGAAAACTCTATAACCCTTCTACTAGTGCTATTCAAAAAAGGAGGAGAATCAGTGGCACGGTGA 450 0.44 MEAKENAAATIFSLSIRDDCKITIGRHPRAIPALIGLLKEGTSIGKKDAATALFNLAVYDPNKARIVSAGAVALLIDLLIDEKAGITDDALGVLALLQGCPDEQEQIKLSSALVPLLIDLLRFGSPKGKENSITLLLVLFKKGGESVAR* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01540 149 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 29 71 IPR000225 GO:0005515
Pte13g01540 149 PANTHER U BOX DOMAIN-CONTAINING 2 144 - -
Pte13g01540 149 SMART arm_5 59 99 IPR000225 GO:0005515
Pte13g01540 149 SMART arm_5 101 141 IPR000225 GO:0005515
Pte13g01540 149 SMART arm_5 17 58 IPR000225 GO:0005515
Pte13g01540 149 SUPERFAMILY ARM repeat 3 144 IPR016024 -
Pte13g01540 149 Gene3D - 1 147 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01540 Pte-Chr13 28148177 28148626 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01540 1 139 U-box Gene Family AT2G28830 50.360 4.41e-37 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01540 - - vvi:100246680 217.238