Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01539 ATGATGGCCAACAACAACAAACAGATTAAAAAGAATAAGGCCTTCGTTGATTTTCAGAAGTTGCAAGAGATATTAACCGGCATCGGTTTGAGAGAGGCATCGGATTACGATGAAGAAATATCAAAGCTAGAGACTGAAGCGCAGAATCAAGCAGGTATCGGAGGACTGATAGTTGTGTCTAACATACACAATCTCATCTCTCTAGTTTCCTATTCAAAATCCATGATATTCAGAGATGGTAGAGATGAGGAAAGGAAAGAAGAAGAATTTACTACCTTCTCTACAGGTATGAACTGCAAATTCTGTTCATCTTCCCAATCCTCGGCACAAAATATTCCTGATGAATTTGGCTGTCCAATCTCCTTTGAATTAATGGGAGATCCAGTGATTGTATCATCTGGACATAGTTATGATAGAAATTCAATTGCACATTGGATTAATTCTGGTCATCATACTTGCCCCAAGAGTGGACAAAGGCTGATTCACACAGCTCTAATACCCAACTATGCATTGAAAAGTTTAGTCCATCAGTGGTGCCAGGAGAATAATATTCCACTCACTGAGCTCAAGTCAACTTTGTCCTCAAAATTGGAGAAAAGTAGTAGCACAAGGAAACCAAATCACACTGCCATTGATTACATTTCTTCAAACAAAGCAGCTATAGATGTTATCAAAAGGACATCAGAATTCTTAGTGGGGAAACTGGCAACTGGGTCTCAGAATATTCAGAGACAGGCTGCATATGAACTGTGCGACTGCTTGCAAAAGCTGGAATGGAATGGACAGTAG 789 0.3967 MMANNNKQIKKNKAFVDFQKLQEILTGIGLREASDYDEEISKLETEAQNQAGIGGLIVVSNIHNLISLVSYSKSMIFRDGRDEERKEEEFTTFSTGMNCKFCSSSQSSAQNIPDEFGCPISFELMGDPVIVSSGHSYDRNSIAHWINSGHHTCPKSGQRLIHTALIPNYALKSLVHQWCQENNIPLTELKSTLSSKLEKSSSTRKPNHTAIDYISSNKAAIDVIKRTSEFLVGKLATGSQNIQRQAAYELCDCLQKLEWNGQ* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01539 262 FunFam RING-type E3 ubiquitin transferase 111 185 - -
Pte13g01539 262 SUPERFAMILY RING/U-box 103 186 - -
Pte13g01539 262 SMART Ubox_2 115 178 IPR003613 GO:0004842|GO:0016567
Pte13g01539 262 CDD RING-Ubox_PUB 113 165 IPR045210 -
Pte13g01539 262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 187 IPR013083 -
Pte13g01539 262 ProSiteProfiles U-box domain profile. 111 185 IPR003613 GO:0004842|GO:0016567
Pte13g01539 262 PANTHER U BOX DOMAIN-CONTAINING 14 250 - -
Pte13g01539 262 Pfam U-box domain 112 183 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01539 Pte-Chr13 28147201 28147989 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01539 17 186 U-box Gene Family AT5G01830 39.412 2.79e-33 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01539 - - qsa:O6P43_013820 313.923