Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01537 ATGAGGGGACATGAGCCTCGTTCAAGCTCTTCCTGTGCAGCATGCAAGCTTTTGAAAAGAAGATGCACACCGAACTGTATATTTGCACCTCACTTCCGGTCTGATGAGCCAAAGAAATTTGCCAAAGTTCACAAGGTCTTCGGAGCAAGCAATGTCAGCAAGATCCTGATTGAAGTGCCGGAGGAGCAACGCGAAGACACTGTGAATTCACTGGCTTATGAGGCTGAGGCAAGGCTTAGAGACCCTGTGTATGGATGCATTGGTGCTATAGCTTTGTTGCAAAGAAAGATGGTGGAACTTCAACATGATCTGGCTATTGCCAGAGCTCGTCTAGCTCGTCACACCCTTACCTCCACTGCTGCTACGGCTGCTACTTCTGCAGCCCTCTTATATGACCAACTTAGGACGGAGTGTGGATTCTCTTCCAGCGGTTCATGTCCGTTTATGCAAAATTAA 456 0.4803 MRGHEPRSSSSCAACKLLKRRCTPNCIFAPHFRSDEPKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQHDLAIARARLARHTLTSTAATAATSAALLYDQLRTECGFSSSGSCPFMQN* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01537 151 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
Pte13g01537 151 Coils Coil 90 110 - -
Pte13g01537 151 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Pte13g01537 151 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01537 Pte-Chr13 28138887 28139886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01537 1 115 AS2 family AT3G11090 81.739 9.73e-68 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pte13g01537 LOB 7.8e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01537 - - vvi:100243201 207.223