Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01536 ATGGACGACCACCACTCACCCCCAACTGCTCCATACGTTGATCCCCATCTCCAAGAAACTAAAACAAAAAACACCGATCATCCCACCGTTACCACCGATGCTACAGCCACTCCTTGTGAAACATCTAATCATTCCACCAGCAGTAGCAACAACGACAGTAACAACAGTACTGGTGTTGACAACAGAAGGAGAGGCAAAGGAAAAGGTGGCCCTGACAATAGCAAGTTTAGATACCGAGGTGTCAGGCAACGCAGTTGGGGCAAATGGGTGGCTGAAATCAGAGAGCCTCGCAAGCGTAGCCGCAAGTGGCTTGGCACTTTTGCTACTGCAGAAGATGCTGCGAGAGCTTACGACCGTGCTGCTATAATCTTGTATGGATCTAGGGCTCAACTCAATCTCCAACCTTCTGCTTGCTCTTCTCAGTCTTCCTCTTCCCGTGGCTCATCATCATCATCTTCTTCTTCTTCGTCCACTCAAACCCTAAGGCCCTTACTTCCTCGTCCAGCTGGCTTTGGCTTCTCCATCTCCTCAAACGCTTCTACTCTTCCCCTTCTGAACCAACCTCCGTCTGCATTCACACCTTACAGTCTTAACCCAAGTAGTAACTGTGACGTGTACTCATCAATTTGCCCTAATTTGGTGCAAAATCCTCAACAAGTGGTGCAACAGTATAACCAGTTCCCAGAATCTGAGGTTACTGTTGGGAGGGTTACTGGGATGTTTGATAATCATTATAAACCAGAACCAACCTCGTACCGAGAGCATACTCATCAAAACGATTTGGCTGTCCAAAATCAGTCACTTCAAGCTGTTCAACTAGAAGATGTGAATTGTCTGATTGGCACAGCAAGTTCGAACTTGTCTCAGACTTCAACACAATCTTTGGTTGCGCCACCTGTTCCGGATCTGTCAGGGGCAGGTGTTCCCGGATCGCCAACTATGTGGCCAATGACACACGAAGAGTATCCACCTAGTATTTGGGATTATACCGATCCCTTCCTTTTTGATTTCTGA 1014 0.4744 MDDHHSPPTAPYVDPHLQETKTKNTDHPTVTTDATATPCETSNHSTSSSNNDSNNSTGVDNRRRGKGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRSRKWLGTFATAEDAARAYDRAAIILYGSRAQLNLQPSACSSQSSSSRGSSSSSSSSSSTQTLRPLLPRPAGFGFSISSNASTLPLLNQPPSAFTPYSLNPSSNCDVYSSICPNLVQNPQQVVQQYNQFPESEVTVGRVTGMFDNHYKPEPTSYREHTHQNDLAVQNQSLQAVQLEDVNCLIGTASSNLSQTSTQSLVAPPVPDLSGAGVPGSPTMWPMTHEEYPPSIWDYTDPFLFDF* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01536 337 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 16 266 - -
Pte13g01536 337 MobiDBLite consensus disorder prediction 1 79 - -
Pte13g01536 337 CDD AP2 77 134 IPR001471 GO:0003700|GO:0006355
Pte13g01536 337 MobiDBLite consensus disorder prediction 59 79 - -
Pte13g01536 337 SMART rav1_2 77 140 IPR001471 GO:0003700|GO:0006355
Pte13g01536 337 SUPERFAMILY DNA-binding domain 77 135 IPR016177 GO:0003677
Pte13g01536 337 FunFam Ethylene-responsive transcription factor 2 77 135 - -
Pte13g01536 337 MobiDBLite consensus disorder prediction 24 58 - -
Pte13g01536 337 Pfam AP2 domain 77 125 IPR001471 GO:0003700|GO:0006355
Pte13g01536 337 MobiDBLite consensus disorder prediction 136 163 - -
Pte13g01536 337 ProSiteProfiles AP2/ERF domain profile. 77 134 IPR001471 GO:0003700|GO:0006355
Pte13g01536 337 Gene3D AP2/ERF domain 76 134 IPR036955 GO:0003700|GO:0006355
Pte13g01536 337 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700|GO:0006355
Pte13g01536 337 PRINTS Ethylene responsive element binding protein signature 100 116 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01536 Pte-Chr13 28129334 28130347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01536 62 337 AP2-EREBP Transcription Factor Family AT2G40220 47.000 5.17e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte13g01536 AP2 1.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01536 K09286 - jre:108991752 250.366