Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01533 ATGGCTTCCATGTCTTCAAGCCCTCGCACCGTTGAAGAGATCTTTAAGGACTATAACTCTAGACGCAGTGCTATCGTTAGAGCTCTCACATACGATGTTGATGATTTTTATGGGCAATGTGATCCGGAAAAGGAAAATTTATGCTTATATGGACACGCAGATGAGTCATGGGAGGTGACTTTACCCGCGGAAGAAGTTCCGCCTGAACTACCTGAACCTGCTTTAGGTATCAACTTTGCAAGGGATGGGATGAAAAGGGTAGATTGGCTGTCTTTGGTTGCTGTCCACAGTGATTGCTGGTTGATTTCCATAGCTTTCTACTTTGGTGCTAGGCTGAACAGGAATGACAGGAAGCGGTTGTTTAGCCTCATGAATGATCTGCCTACTGTCTATGAGATTGTTGCAGGAAGAAAGCCTGTAAAAGAAAAGCCTACCATGGACAGCGGAAGCAAATCTAAAAACAGCTCTAAGAGATCAAGTGACGGTCAAGTAAGAAGTAATCCCAAGTTACTGGATGAAAGTAACGGAGAGGATGAAGACAACCACAGCGAAACCCTTTGTGGAATTTGTGGTGAAAATTACACTACGTCAGATGAGTTTTGGATTGGCTGTGATACATGCGAGAGGTGGTTTCATGGGAAGTGTGTGAAGATCACGCCGGCCAAGGCAGAAAGCATCAAGCAGTACAAGTGCCCTTCTTGTAGCAACAAGAGGGGTAGGCAGTAG 726 0.4518 MASMSSSPRTVEEIFKDYNSRRSAIVRALTYDVDDFYGQCDPEKENLCLYGHADESWEVTLPAEEVPPELPEPALGINFARDGMKRVDWLSLVAVHSDCWLISIAFYFGARLNRNDRKRLFSLMNDLPTVYEIVAGRKPVKEKPTMDSGSKSKNSSKRSSDGQVRSNPKLLDESNGEDEDNHSETLCGICGENYTTSDEFWIGCDTCERWFHGKCVKITPAKAESIKQYKCPSCSNKRGRQ* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01533 241 Pfam PHD-finger 187 237 IPR019787 -
Pte13g01533 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 236 IPR013083 -
Pte13g01533 241 ProSitePatterns Zinc finger PHD-type signature. 187 234 IPR019786 -
Pte13g01533 241 SUPERFAMILY FYVE/PHD zinc finger 176 239 IPR011011 -
Pte13g01533 241 ProSiteProfiles Zinc finger PHD-type profile. 184 237 IPR019787 -
Pte13g01533 241 FunFam PHD finger alfin-like protein 179 236 - -
Pte13g01533 241 PANTHER CPG BINDING PROTEIN 7 241 IPR045104 GO:0006355|GO:0042393
Pte13g01533 241 MobiDBLite consensus disorder prediction 138 182 - -
Pte13g01533 241 Pfam Alfin 10 135 IPR021998 GO:0006355|GO:0042393
Pte13g01533 241 SMART PHD_3 186 235 IPR001965 -
Pte13g01533 241 CDD PHD_AL_plant 186 237 IPR044104 -
Pte13g01533 241 MobiDBLite consensus disorder prediction 149 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01533 Pte-Chr13 28056400 28059672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01533 1 242 Alfin-like Transcription Factor Family AT5G05610 73.251 6.69e-120 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Pte13g01533 Alfin 9.6e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01533 K26274 - cave:132186896 422.935