Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01516 ATGGACGAGGGAATGCCAGGCTTTTACTTGAAAGCAGGTGGGGCTGTTCGTGGTGGTAGCAATGGCAGTGGAACTGGTACTAAGTGTGGTCGTTGGAATCCCACAGCTGAACAGGTTAAAGCTCTGACTGACTTGTTCAGGTCCGGACTCCGTACACCGAGCACTGATCAGATTCAGAAGATCTCAAGTCAGCTGAGCTTTTATGGAAAGATTGAGAGCAAGAACGTATTTTATTGGTTTCAAAACCACAAAGCCAGAGAACGACAGAAGCGCCGCAAAGTCTCCTTTGACGAAAGAGATGTTCTTCGTGGAGGAAACAAGATCATTTCCTCTACACCACATTTTGTAGAGACAAGAAATCAAAGCTGTGATGAGCCTGAGAGGGCGATTGAGACTCTTCAACTTTTCCCCTTAAACTCCTTTAGCGAATACGAATCAGAGAAGAGAAGGCTGCATACAGATGAATACAAGGAGAATACAATGTTTTCTTCCAACATTGGGGAAGAGATTGAACGCCCACCATTGGACTTGCGCTTAAGCTTTCTGTAA 549 0.4517 MDEGMPGFYLKAGGAVRGGSNGSGTGTKCGRWNPTAEQVKALTDLFRSGLRTPSTDQIQKISSQLSFYGKIESKNVFYWFQNHKARERQKRRKVSFDERDVLRGGNKIISSTPHFVETRNQSCDEPERAIETLQLFPLNSFSEYESEKRRLHTDEYKENTMFSSNIGEEIERPPLDLRLSFL* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01516 182 SUPERFAMILY Homeodomain-like 30 92 IPR009057 -
Pte13g01516 182 Pfam Homeodomain 29 89 IPR001356 GO:0003677
Pte13g01516 182 CDD homeodomain 31 91 IPR001356 GO:0003677
Pte13g01516 182 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 19 100 IPR044555 GO:0003700|GO:0099402
Pte13g01516 182 ProSiteProfiles 'Homeobox' domain profile. 25 90 IPR001356 GO:0003677
Pte13g01516 182 SMART HOX_1 27 94 IPR001356 GO:0003677
Pte13g01516 182 FunFam WUSCHEL-related homeobox 11 28 96 - -
Pte13g01516 182 Gene3D - 28 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01516 Pte-Chr13 27905226 27906045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01516 13 183 Wox Gene Family AT3G11260 59.016 4.61e-64 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Pte13g01516 Homeodomain 3.9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01516 - - qsa:O6P43_020247 244.588