Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01506 ATGGTGATGCTGCCAGAGAAGTCACATGTTGTCATTGACATTGAGAATGACGGTAGCCGGAGCTTCGTTTTAACAGGCGGAGATGGTGGTTACTCTGAAGCAAGTGGTGACAAGTCAGGTAAAGAGTCAACAAGGTCTACTGGCGACTCAGTTCCCGAGATTTCTGGGATTTCTGAGAAGGAGAGGAGATCCTCTGAGTCTGACAGCTCAATGGAATTGGATCTGGAAAGTGGGGTGGCTGAAATTAAGCTACATTTTACTAAAATGGAGAGAGACTGCAGGATTTGTCATTTGAGTATAGATGCAACCGATCATGAATCTGGGATACCTACAGAGCTGGGCTGTTCTTGCAAGGATGATTTGGCTGCAGCACACAAGCACTGTGCTGAGGCTTGGTTCAAAATCAAGGGTAACATAACTTGTGAAATCTGCGGATCAATTGCGCGGAACGTAGCTGGTGCCAATGAGACAGAAACGGCAGATCAATTGTCTGAGGCAAATGATGCTGCAGTTGCAACACAAAATGCACATGTTCAGCACGCAGCGAGTCAAAGCTTTTGGCAGGGTCACCGATTCCTGAATTTCCTGTTAGCATGTATGGTCTTTGCCTTTGTTATGTCATGGCTATTCCACTTCAATGTGCCTTCATGA 651 0.4608 MVMLPEKSHVVIDIENDGSRSFVLTGGDGGYSEASGDKSGKESTRSTGDSVPEISGISEKERRSSESDSSMELDLESGVAEIKLHFTKMERDCRICHLSIDATDHESGIPTELGCSCKDDLAAAHKHCAEAWFKIKGNITCEICGSIARNVAGANETETADQLSEANDAAVATQNAHVQHAASQSFWQGHRFLNFLLACMVFAFVMSWLFHFNVPS* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01506 216 MobiDBLite consensus disorder prediction 55 70 - -
Pte13g01506 216 Pfam RING-variant domain 93 144 IPR011016 GO:0008270
Pte13g01506 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 154 IPR013083 -
Pte13g01506 216 PANTHER ZINC FINGER, RING-CH-TYPE 37 215 - -
Pte13g01506 216 SUPERFAMILY RING/U-box 90 147 - -
Pte13g01506 216 SMART ringv_2 92 145 IPR011016 GO:0008270
Pte13g01506 216 ProSiteProfiles Zinc finger RING-CH-type profile. 85 151 IPR011016 GO:0008270
Pte13g01506 216 MobiDBLite consensus disorder prediction 19 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01506 Pte-Chr13 27818806 27821782 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01506 34 216 C3H Transcription Factor Family AT5G05830 58.152 8.53e-73 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01506 - - cave:132188815 256.529