Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01498 ATGGCTCCTTCAGGTGTCAAACACCTTTCTCATCCATGTATTTATGAGAGGAAGTCTCGGTTTATGAAATGGTTGAGCAAGCTTTTCAAGATTAGAGGAGGAAGTGGACGGCGTTATCCACAGCTTATTAGGGAGGAAAACACAGTTTGGCGTGTACCACCTAGATCAATGGATGATCCTGGTAGGGCAGACAAGGAGAAAGAGGATTTAGACCGTGCAATTGCACTTTCCTTGTCAGAAGATTTAAAGAGACCAAATGTGAATGGTTATAGATGGCGGACAGACAATGAGGAAGAACTTGCACAGACACCTCAGGATCATCGATTTCCGCCTGCATATCCACCTCATGCGCCAACACAATATTATCCCAGGGGATATAGAATATGTGGGGGATGCTACCAGGAGATAGCATATGGCAATTACTTGGGATGTCTATCTACCTTCTATCATCCAAACTGTTTTCGCTGTCGTTCTTGTGGTTATCCAATCACTGAGCGCGAGTTTTCTTTGTCAGGGAGAGATCCATACCATAAATCATGCTTCAAAGAGATGACACATCCCAAGTGTGAAGTCTGTCATCAATTTATTCCCACAAATAACGCTGGTTTGATAGAGTACAGATGCCACCCATTTTGGTCACAAAAATATTGTCCCTCTCATGAACTTGATAACACAGCTCGCTGCTGTAGCTGTGAAAGACTGGAGTCTTGGAATACGAGATACTATGTTTTGGAAGATGGACGAAATTTATGCTTCGAGTGCATGGAATCTGCTATAACGGACACTGGTGACTGTCAGCCTCTCTACCATTCCATCAGAGATTATTACGAAGGGATGAATATGAAGATAGATCAACAGATTCCCATGCTACTGGTTGAGCGACTGGCTCTTAATGAAGCTATTGTTGGGGAGAAGAATGGTTTCCATCACTTGCCTGAAACTAGAGGATTATGCCTTTCTGAAGAACAAACCGTTACAAGTATTCAAAGAAGGCCGAAAACTGGAGATCATCGGCTTGTTGGAATGAGTACTCAAGCTCAAAAGCTAACACGGAAATGTGAAGTTTCAGCAATTCTTGTACTCTATGGCCTCCCAAGATTGCTCACAGGTGCTATCCTTGCTCACGAATTGATGCATGGCTGGTTACGCCTCAAAGGGTACCGCAATCTTAACCCTGAGGTGGAGGAAGGTATATGTCAGGTGCTATCTTACATGTGGCTGGAGTCAGAAGTCATGCCAGGATCTGAAAACATGCCATCTACTTCCTCAGCAGCCACCTCTTCTATATCATCATCCAAAAAAGGTGCCAAATCAGAAGCGGAAAATAAACTGGGAAAATTTTTCATGCACCAAATTGCTCATGATGCTTCCCCAGCATATGGGGGTGGTTTCAGAGCTGCAAATGCAGCTGTTAGTAAGTACGGTCTACGTCGTACACTTGATCACATTCGTCTGACAGGAAACTTTCCACTGTAA 1476 0.4377 MAPSGVKHLSHPCIYERKSRFMKWLSKLFKIRGGSGRRYPQLIREENTVWRVPPRSMDDPGRADKEKEDLDRAIALSLSEDLKRPNVNGYRWRTDNEEELAQTPQDHRFPPAYPPHAPTQYYPRGYRICGGCYQEIAYGNYLGCLSTFYHPNCFRCRSCGYPITEREFSLSGRDPYHKSCFKEMTHPKCEVCHQFIPTNNAGLIEYRCHPFWSQKYCPSHELDNTARCCSCERLESWNTRYYVLEDGRNLCFECMESAITDTGDCQPLYHSIRDYYEGMNMKIDQQIPMLLVERLALNEAIVGEKNGFHHLPETRGLCLSEEQTVTSIQRRPKTGDHRLVGMSTQAQKLTRKCEVSAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLNPEVEEGICQVLSYMWLESEVMPGSENMPSTSSAATSSISSSKKGAKSEAENKLGKFFMHQIAHDASPAYGGGFRAANAAVSKYGLRRTLDHIRLTGNFPL* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01498 491 Pfam Protein DA1 278 486 IPR022087 -
Pte13g01498 491 SMART lim_4 128 180 IPR001781 -
Pte13g01498 491 PANTHER PROTEIN DA1-RELATED 2 24 490 IPR045218 -
Pte13g01498 491 MobiDBLite consensus disorder prediction 415 435 - -
Pte13g01498 491 Pfam LIM domain 129 183 IPR001781 -
Pte13g01498 491 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 121 154 - -
Pte13g01498 491 FunFam Protein DA1-related 2 117 182 - -
Pte13g01498 491 CDD LIM_DA1 129 181 - -
Pte13g01498 491 ProSitePatterns LIM zinc-binding domain signature. 129 163 IPR001781 -
Pte13g01498 491 Gene3D Cysteine Rich Protein 124 188 - -
Pte13g01498 491 ProSiteProfiles LIM domain profile. 127 187 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01498 Pte-Chr13 27694227 27698433 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pte13g01498 DA1-like 6.2e-98 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01498 - - qsa:O6P43_014377 827.009