Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01482 ATGTCAGGCGTTGAAGGCTCATCATCATGTGGAGCATGCAGATTCCTAAGAAGAAGGTGTGCAATTGATTGTGTATTTGCTCCATACTTCTGTTACGACGAGGCTACAACCCATTTTGCGGCAGTGCACAAGGTCTTTGGTGCTAGTAACGTCTCTAGACAATTATTGAACCTACCAGAAAATCATAGAATTGACGCAGCAATTGCTATATGCTATGAAGCACTGGCTCGAATGGAAGATCCTGTGCATGGCTGTGTAGCTCATATTTTTGCACTGCAAGGACAGATTGCCAGCTTACAAGAAGAAATAGATATGCTTGGAAATCTTATGGCTACTCCAGATGGTGTTGGTGACACCGCTTGTCTTAGATCTCAAGCATTTATCGCAAACCACTTTTCGGAGATACCACCACCACTTGTTTCACCGCAGCTTGACAGCATGAAAGCCGATCAACCTGTTCAAGATCAATCAGCTCTGGTTGTCTCTCACGAAGGAAGTGCACCTGTGTACCAAGAGCAAATGAGTGCACACTTTACAACAGCAGTCGAATGGGAAGACCATTTGCCTGGAGATCAGTTCAGCCAATTAGGTCCGCCGGTAGAAAGTGTCTTTGAAGGACTCGATCAAAACATCTTTGCAGGCGATCCATGGTTCATGATTGATTTTTAG 669 0.4469 MSGVEGSSSCGACRFLRRRCAIDCVFAPYFCYDEATTHFAAVHKVFGASNVSRQLLNLPENHRIDAAIAICYEALARMEDPVHGCVAHIFALQGQIASLQEEIDMLGNLMATPDGVGDTACLRSQAFIANHFSEIPPPLVSPQLDSMKADQPVQDQSALVVSHEGSAPVYQEQMSAHFTTAVEWEDHLPGDQFSQLGPPVESVFEGLDQNIFAGDPWFMIDF* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01482 222 ProSiteProfiles LOB domain profile. 8 110 IPR004883 -
Pte13g01482 222 PANTHER LOB DOMAIN CONTAINING PROTEIN 7 142 - -
Pte13g01482 222 Pfam Lateral organ boundaries (LOB) domain 9 106 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01482 Pte-Chr13 27521534 27522341 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01482 8 112 AS2 family AT5G06080 67.619 8.40e-50 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pte13g01482 LOB 3.4e-33 No_clan