Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01469 ATGGACATAACCCCCACAATTATCAATACCATCACCACCACCACTCATACCGCAACTACTACCAGCGCAAAATCTCCAGAACCTGAAAGTGAAACTCCTACACGGATCCAACCCAGTAAGCCTTTTCCTTCGTCTAATGGCGTGCTTAAGCGCCACCCACCCCATCACCATCAACTTCTTCCTCACTACCTTGCTGGCCAACAATTTCCTTCAGTAGTCTATAAAGAATGCTTGAAGAACCATGCAGCCAGCTTGGGAGGCCACGCGGTGGATGGTTGTGGTGAGTTCATGCCTTCTCCTTCTGCAACGTCCACAGATCCTACTTCTCTGAAATGTGCTGCTTGTGGTTGCCACAGAAATTTCCACCGCCGTGAACCCGAGGATCATGCTGCAATTCCAGCTACCCATGTCTTGGAATATCAACCCCATCATCGACATCATCCTCCACCTCCTCAACAATTTCCAGCTCCTAATCGAAGTCCCAATTCTGCTTCCCCACCACCGATCTCATCATCTTATTTCCCTTCTGCACCCCACATGCTTCTAGCTTTATCTTCTGGTTTGTCCGCTCCCCCGGAAAACGTAGCTCCACCTTCGCACGCTTACCTGACGCCAATTTCAAGTACCCGGAAGCGTTTCAGGACTAAATTCAGCCAAGAACAGAAGGATAAGATGTATCAATTCGCCGAGAGAATAGGGTGGAAGATGCAGAAGATAGATGATGACTTGGTCCAAGAATTGTGCAATGAAATTGGTGTCGATAGAGGAGTTCTTAAAGTCTGGATGCACAACAATAAAAACATCGTGAGGAAAAGGGATATTACTGGTAGTAGAGGCATCCATGAGCTTGAGCGTGAGCGTGAGCGCATCACTCACGGCAACGAAATGGATGGAAACACCACCAACACCACCAACAATGGCAGCAGCTTGGATCCAAATCACTACCATAGTGGGGCCAATATTGGTACCAATGGATCGTCTTCTTCCTCTTGA 993 0.4804 MDITPTIINTITTTTHTATTTSAKSPEPESETPTRIQPSKPFPSSNGVLKRHPPHHHQLLPHYLAGQQFPSVVYKECLKNHAASLGGHAVDGCGEFMPSPSATSTDPTSLKCAACGCHRNFHRREPEDHAAIPATHVLEYQPHHRHHPPPPQQFPAPNRSPNSASPPPISSSYFPSAPHMLLALSSGLSAPPENVAPPSHAYLTPISSTRKRFRTKFSQEQKDKMYQFAERIGWKMQKIDDDLVQELCNEIGVDRGVLKVWMHNNKNIVRKRDITGSRGIHELERERERITHGNEMDGNTTNTTNNGSSLDPNHYHSGANIGTNGSSSSS* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01469 330 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 74 125 IPR006456 -
Pte13g01469 330 MobiDBLite consensus disorder prediction 288 330 - -
Pte13g01469 330 MobiDBLite consensus disorder prediction 147 164 - -
Pte13g01469 330 NCBIfam homeobox domain, ZF-HD class 210 267 IPR006455 -
Pte13g01469 330 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 50 267 - -
Pte13g01469 330 ProSiteProfiles 'Homeobox' domain profile. 208 272 IPR001356 GO:0003677
Pte13g01469 330 MobiDBLite consensus disorder prediction 1 44 - -
Pte13g01469 330 Pfam ZF-HD protein dimerisation region 72 126 IPR006456 -
Pte13g01469 330 MobiDBLite consensus disorder prediction 295 330 - -
Pte13g01469 330 FunFam Zinc-finger homeodomain protein 2 199 271 - -
Pte13g01469 330 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 74 125 IPR006456 -
Pte13g01469 330 Gene3D - 204 270 - -
Pte13g01469 330 MobiDBLite consensus disorder prediction 141 171 - -
Pte13g01469 330 MobiDBLite consensus disorder prediction 1 55 - -
Pte13g01469 330 SUPERFAMILY Homeodomain-like 204 271 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01469 Pte-Chr13 27047683 27049286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01469 8 266 ZF-HD Transcription Factor Family AT5G15210 51.154 6.46e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pte13g01469 ZF-HD_dimer 7.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01469 - - qsa:O6P43_009085 358.992