Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01467 ATGGGTAGACCGCCTTGTTGTGATAAAGAAGGAGTCAAGAAAGGACCCTGGACTCCTGAAGAAGACATTATATTGGTGTCTTACATACAAGAACATGGTCCTGGAAATTGGAGGGTTGTTCCCACCAATACAGGGCTATTGAGATGCAGTAAGAGTTGCAGGCTTAGATGGACTAATTATCTTAGGCCTGGAATTAAACGTGGGAATTTTACTGAACAGGAGGAGAAGATGATCATCCACCTTCAAGCACTTCTAGGCAACAGATGGGCTGCTATAGCTTCATATCTACCACAGAGAACAGATAATGACATTAAAAACTATTGGAACACCCATCTGAAGAAGAAGCTCAAGAAGCTTCAAGCTGGTAGTATTGATGGCCACTTTGAAGATGGATCTTCATCTCCTCACTCGATGCCTAGAGGTCAGTGGGAAAGAAGACTACAAACAAATATTCACATGGCCAAGCGAGCTCTCAGCGAGGCACTTTCAGCTAAGAACAATAACTCTCTATCTGAGTTGAATACTCCTGATGCGTCACAGTCTGCTGCTAAATCTCTGCAAACTTCATCAACCTACGCAGCAAGCGCTGAGAATATAGCTCGGCTACTCAAAGGATGGATGGGAAATTCGTCGAATCCCGGTCGTGCTAACTCATCTGCTACGACCCAGAATTCATTCAACAACATTGCTTCAGGGACTGATACCGCTTCTAGTGACCAAGGAACACCAAGTGCAGCAACCCGAAACGGATTTGGAATTTCTGATAATTTTGAATCTCTATTGGAGTCTTTGGACTCTTCAACTTCTGAATTTTCCCAATCTCTCTCACCTGACCCTGTCCTTTTTCAAGATGAAAGCAAACCTAATGTCGGTGACCATGAAATGCACTTGTCTTTCATTGAGAAATGGCTTTTTGATGAGAGCATTGGTCAGGATAAAATATCCTACAGTAGCGATACCTTAATTGCAGGTTTTACTGATTTTTTCTGA 990 0.4283 MGRPPCCDKEGVKKGPWTPEEDIILVSYIQEHGPGNWRVVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTEQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQAGSIDGHFEDGSSSPHSMPRGQWERRLQTNIHMAKRALSEALSAKNNNSLSELNTPDASQSAAKSLQTSSTYAASAENIARLLKGWMGNSSNPGRANSSATTQNSFNNIASGTDTASSDQGTPSAATRNGFGISDNFESLLESLDSSTSEFSQSLSPDPVLFQDESKPNVGDHEMHLSFIEKWLFDESIGQDKISYSSDTLIAGFTDFF* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01467 329 SMART sant 13 63 IPR001005 -
Pte13g01467 329 SMART sant 66 114 IPR001005 -
Pte13g01467 329 CDD SANT 16 61 IPR001005 -
Pte13g01467 329 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 234 - -
Pte13g01467 329 FunFam MYB-related transcription factor 13 66 - -
Pte13g01467 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pte13g01467 329 MobiDBLite consensus disorder prediction 210 249 - -
Pte13g01467 329 Gene3D - 68 127 - -
Pte13g01467 329 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pte13g01467 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pte13g01467 329 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pte13g01467 329 FunFam Transcription factor MYB30 68 126 - -
Pte13g01467 329 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pte13g01467 329 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pte13g01467 329 Gene3D - 13 66 - -
Pte13g01467 329 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pte13g01467 329 CDD SANT 69 111 IPR001005 -
Pte13g01467 329 MobiDBLite consensus disorder prediction 268 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01467 Pte-Chr13 26995496 26997387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01467 1 307 MYB Transcription Factor Family AT5G62470 49.580 9.57e-100 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte13g01467 Myb_DNA-binding 2.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01467 K09422 - qsa:O6P43_004488 427.943