Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01461 ATGGGACTCATTGACGAGGAGCTTGTGGGGTTTTATCTGATCTGGAAAATCCAACAGCGGCCTCTCCCTATTGAGCTAATAAAGCAAGCGGACATATATAAATATGATCCTTGGGATCTTCCAAAGTTGGCTATTAATGGTGAGAAGGAATGGTATTTTTATTGCCCAAGGGACCGTAAATACCGAAACAGCGCAGTGCCCAATAGAGTCACAGCAGCTGGATTTTGGAAGGCAACTGGGACCGACTGGCCAATCTCCTCCTCTGTCGGAAAGTGCATCGGTTTGAAAAAGTCCTTAGTGTTTTACAGAGGTAGAGCTGCCAAAGGCCTCAAGACTGACTGGATGATGCATGAATTTCGATTTCCTCCCTTGTCAGACTCATTGCCATCCAAGAAGGTTTTGATCAAAAGCTTTCCTGCAAGTTTGATACTCTGA 435 0.4506 MGLIDEELVGFYLIWKIQQRPLPIELIKQADIYKYDPWDLPKLAINGEKEWYFYCPRDRKYRNSAVPNRVTAAGFWKATGTDWPISSSVGKCIGLKKSLVFYRGRAAKGLKTDWMMHEFRFPPLSDSLPSKKVLIKSFPASLIL* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01461 144 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 122 - -
Pte13g01461 144 ProSiteProfiles NAC domain profile. 1 140 IPR003441 GO:0003677|GO:0006355
Pte13g01461 144 Gene3D NAC domain 4 137 IPR036093 GO:0003677|GO:0006355
Pte13g01461 144 Pfam No apical meristem (NAM) protein 5 120 IPR003441 GO:0003677|GO:0006355
Pte13g01461 144 SUPERFAMILY NAC domain 5 126 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01461 Pte-Chr13 26804892 26810532 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01461 4 120 NAC Transcription Factor Family AT1G26870 81.356 2.05e-67 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte13g01461 NAM 3.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01461 - - twl:119997845 238.424