LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte13g01439	ATGTATGATCATGTTTACAAGTCACAATATATTGGTGGCCAGAAGGAGAAATTTGTGAGATGGACTCAAAACAATTGGTCGATCCGATCCCTGAGATCTGGTGTCACCAACGCAGTCTTTCCAGAAGATCTTAAAGTATCTGAAAAAGGAATATTTGATCCTCAAAGCAAATCTCTTATGACCTATAACAGAATTTTTGAGCTAATATGTATTTTCTCAGTAAGTGTTGATCCTTTGTTCCTCTATCTTCCAATCTTCAACCACTTGTCCTACTGCCTTGCTATAGACACCCAGCTAGCCAAAGCAGCTGTTTGGATCCGAAGTATATTAGATGTTTTGTATGTTTTCCGCATAGCTTTACAGTTTCGAACAGCTTTTATTGCACCTTCTTCTCGAGTTTTTGGACGAGGAGAACTTGTGATAGATCCTGCACAGATTGCAAAGAGATATCTGATGCGTTACTTCATTGTTGATCTCGTTTCTGTGCTTCCCCTACCGCAGATTTGGCCGCTTATACCTCTATTTTCTGAGATGAAAAAAGCTGCTGGTTCTGTTTCTACTAATGAATTAATAGGTGCAGCATATTACTTACTTTGGTTTCTTCTTTGTGGTCATATAGCTGGGTCTGCTTGGTACTTGTTAGCTGTAGAGCGTAACGAGACATGCTGGCGCAAAGCTTGTGCTGTCACTCATGGTTGTTACAAGAATTTCTTATATTGTGGAAACAGGCACTTGCAGGGCTATGCTGCATGGAGAAGTATCAGTGGAGGTGTCCTCTCTAAAAAGTGCGGTGTCATTGGTGGGAAGTCAGAATTCGAATACGGTATATACACAAATGCAGTTGGATCTGGTATTTTAACAACCAGGGAACTCTTCACCAAGTTGTGTTACTGCTTGTGGTGGGGCCTTCAAAATTTGAGGTACATATCCTGGAGAGGTTGTGTCTGCATATTGATAGCCGTTGCAGGGCTTACACTCTTTGCTGTTCTTCTTGGAAACATGCAGGCAAGTATGTACCTACAGTCAATACAAGTTCGTCTTGAGGAGATGAGAATTAAGACTCGTGATTCTGAGCAATGGATGCATCATCGCTTGCTTCCACCGGAACTGCGAGAAAAAGTCAGGCGCTATGATCAATACAAGTGGCTAGAAATGCGTGGAGTGGATGAAGAGAGCTTGGTACAGAATCTGCCTAAGGATTTGAGGAGAGACATCAAACGCCATCTCTGTCTGACTTTGGTGAGAAAGACGGTCTTGAACACTGATCAAGTTCTATCTACATCCAGGTTCCTCTGTTTGCCAATATGGATGAACGGTTTGCTTGATGCAATCTGTGAGAGATTAAAGCCAAGTCTATACACAAGAGATACATACATTGTCAAAGAAGGAGATCCAGTGAATGAGATGCTCTTCATTATTCGAGGTAATCTAGAGAGTGTTACAACTGATGGGGGAAGGAGTGGATTTTTCAACAGAGGGATACTTAAAGAGTGTGACTTCTGTGGAGAAGAGCTATTAACATGGGCATTGGACCCTAAAGCTGCCTCCAACTTGCCATCATCAAGTAGGACAGTAAGAGCTTTAACTAAGGTTGAGGCATTTGCTCTTGAAGCAGAAGAGGTGAAGTTCGTTGCTAGTCAGTTTAGGCGGCTTCAAAGCAGACAGGTCCAGCACACCTTCAGGTTTTACTCACAGCAATGGCGAACATGGGCTGCGTGCTTCATTCAAGCTGCATGGCGACGATATAAATCGAGAAGAGCTGCCGAGAAGCATCGACAGGAAGAGGAAGGAAATGAAATCTTTTATGATGACGATCAAGATGAAGATGAAGATGATGATACAAAAGCCTTAGTTGCAGGAGCTGATAGATCAAGCTGCAGTCTTGGAGCAACCATGTTGGCATCACGATTTGCTGCCAATGCACTCCGTGGTCATAAGCAGAGGACCACAGGTGGCCTGAAGCTACAGAAACCACGAGAACCTGACTTCGATGACTATGGAGGAGAGTAG	2010	0.4318	MYDHVYKSQYIGGQKEKFVRWTQNNWSIRSLRSGVTNAVFPEDLKVSEKGIFDPQSKSLMTYNRIFELICIFSVSVDPLFLYLPIFNHLSYCLAIDTQLAKAAVWIRSILDVLYVFRIALQFRTAFIAPSSRVFGRGELVIDPAQIAKRYLMRYFIVDLVSVLPLPQIWPLIPLFSEMKKAAGSVSTNELIGAAYYLLWFLLCGHIAGSAWYLLAVERNETCWRKACAVTHGCYKNFLYCGNRHLQGYAAWRSISGGVLSKKCGVIGGKSEFEYGIYTNAVGSGILTTRELFTKLCYCLWWGLQNLRYISWRGCVCILIAVAGLTLFAVLLGNMQASMYLQSIQVRLEEMRIKTRDSEQWMHHRLLPPELREKVRRYDQYKWLEMRGVDEESLVQNLPKDLRRDIKRHLCLTLVRKTVLNTDQVLSTSRFLCLPIWMNGLLDAICERLKPSLYTRDTYIVKEGDPVNEMLFIIRGNLESVTTDGGRSGFFNRGILKECDFCGEELLTWALDPKAASNLPSSSRTVRALTKVEAFALEAEEVKFVASQFRRLQSRQVQHTFRFYSQQWRTWAACFIQAAWRRYKSRRAAEKHRQEEEGNEIFYDDDQDEDEDDDTKALVAGADRSSCSLGATMLASRFAANALRGHKQRTTGGLKLQKPREPDFDDYGGE*	670

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte13g01439	669	ProSiteProfiles	IQ motif profile.	568	597	IPR000048	GO:0005515
	Pte13g01439	669	MobiDBLite	consensus disorder prediction	645	669	-	-
	Pte13g01439	669	MobiDBLite	consensus disorder prediction	588	614	-	-
	Pte13g01439	669	SMART	cnmp_10	432	563	IPR000595	-
	Pte13g01439	669	SUPERFAMILY	cAMP-binding domain-like	349	551	IPR018490	-
	Pte13g01439	669	Gene3D	Helix hairpin bin	346	410	-	-
	Pte13g01439	669	FunFam	Cyclic nucleotide-gated ion channel 1	435	548	-	-
	Pte13g01439	669	Gene3D	Jelly Rolls	435	550	IPR014710	-
	Pte13g01439	669	SUPERFAMILY	Voltage-gated potassium channels	55	338	-	-
	Pte13g01439	669	FunFam	Cyclic nucleotide-gated ion channel 1	346	410	-	-
	Pte13g01439	669	ProSiteProfiles	cAMP/cGMP binding motif profile.	444	516	IPR000595	-
	Pte13g01439	669	MobiDBLite	consensus disorder prediction	653	669	-	-
	Pte13g01439	669	MobiDBLite	consensus disorder prediction	599	614	-	-
	Pte13g01439	669	Pfam	Cyclic nucleotide-binding domain	453	542	IPR000595	-
	Pte13g01439	669	CDD	CAP_ED	440	563	IPR000595	-
	Pte13g01439	669	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	171	663	-	-
	Pte13g01439	669	Pfam	Ion transport protein	64	337	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte13g01439	Pte-Chr13	25810365	25813906	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte13g01439	5	664	Ion Channels	AT1G15990	55.952	0.0	779

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte13g01439	K05391		-	cave:132187225	850.506