Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01430 ATGGAGGCAAAGACAGATAAGATGGGGAGGGGAAGAGTGGAATTGAAGAGGATAGAGAACAAGATAAACAGGCAGGTTACTTTTGCAAAGAGGAGAAATGGTTTGCTCAAGAAAGCATATGAACTATCTGTTCTCTGTGATGCTGAGGTTGCCCTCATTATCTTCTCAAACCGCGGCAAGCTTTATGAGTTCTGCAGCAGCCCTAGCATGCTCAAAACACTGGAAAGGTACCAGAAGTGCAGCTACGGTGCAGTTGATATCAACAGACCTGCCAAAGAGCTTGAGCAGACAAGCTACCGTGAGTACATGAAGCTGAAAACAAGGTTTGAGTCCCTCCAAAGAACCCAAAGAAACCTTCTAGGAGAAGAATTGGGTCCATTGAATACCAAGGAGCTCGAGCAGCTTGAGCGTCAACTGGAGTCATCCTTAAAGCAAGTGAGATCGACAAAGACTCAGTTCATGCTGGACCAGCTTGCTGACCTCCACAATAAGGAACAACTGTTAGTAGAAGCCAACAGAGCTTTAAGTATAAAGCTTGATGAAATTAATTCAAGGCATCACCTTCGTCAATCATGGGAAGCCGGTGAACAAAGTATGTTATTTGGTCAACATAGTACCCAAACTCAAGGCTTCAGCTTCCAGCCTTTAGATTGCAATCCCACGTTACAAATAGGGTACAACGCTGTGGCATCAGATCAGATGACCCCGACAACTCATGTCCAGCAAGAAAGTGGCTATATACCCGGATGGATGCTTTAA 759 0.4493 MEAKTDKMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSPSMLKTLERYQKCSYGAVDINRPAKELEQTSYREYMKLKTRFESLQRTQRNLLGEELGPLNTKELEQLERQLESSLKQVRSTKTQFMLDQLADLHNKEQLLVEANRALSIKLDEINSRHHLRQSWEAGEQSMLFGQHSTQTQGFSFQPLDCNPTLQIGYNAVASDQMTPTTHVQQESGYIPGWML* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01430 252 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Pte13g01430 252 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Pte13g01430 252 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Pte13g01430 252 ProSiteProfiles K-box domain profile. 95 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte13g01430 252 Gene3D - 20 91 IPR036879 GO:0003677|GO:0046983
Pte13g01430 252 Coils Coil 129 152 - -
Pte13g01430 252 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Pte13g01430 252 CDD MADS_MEF2_like 9 86 IPR033896 GO:0000977|GO:0045944
Pte13g01430 252 ProSitePatterns MADS-box domain signature. 10 64 IPR002100 GO:0003677|GO:0046983
Pte13g01430 252 PANTHER SERUM RESPONSE FACTOR HOMOLOG 8 180 - -
Pte13g01430 252 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Pte13g01430 252 SUPERFAMILY SRF-like 9 83 IPR036879 GO:0003677|GO:0046983
Pte13g01430 252 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Pte13g01430 252 Pfam K-box region 95 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte13g01430 252 FunFam MADS-box transcription factor 1 20 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01430 Pte-Chr13 25596462 25600553 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01430 8 253 MADS-box Gene Family AT5G15800 69.811 7.96e-118 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte13g01430 K-box 2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01430 K09264 - qsa:O6P43_009196 405.601