Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01423 ATGGGCTCTGTTTGTTGCTGCTTGAGTGTTGATGATTTTGGAGATTACATGAATCCAAATAGTTCTGTATATAGGAACTGTATGTGCCTTGGTAGTTTTGTACAGAACTTCTTGAATATGTCTTCATCAGTATTCCGTAGAGGAGAAGTGCTTTCCCTTCCTTCATCTATTCCGGGGGCAGCATCTGTGATTTCTACTGCATCACTTGATAATTCTCTATCAGATACATATCGTTCTCCTCCAAGGCCCTTGCCGTATGATGCTGACCCTAGGTACTTGCATTTGCAACGTGATGCACTTGTCTCTAGACATGAGAAGGGTTCAAGTCATTCTAATGAGGAATCAGAACCTCTTAGAAGTGATATTGATGCAGAATCAGACCCTCTAAATCAAAGAGATAAATGGAATAGATCTACTTGCGGAGATGCATCAAAGGGATACCATTCAAAGACACCAATGAAACTTTCGTCAACAATATATACAACAGAAGTTGCACAGATCTATGCATCATCGGAAGATGAAGATGTTTGTCCAACTTGTCTAGAGGAGTACACTCCAGAGAACCCCAAGATATTGACAAAATGCTCTCACCATTTTCATCTTGGTTGTATATATGAGTGGATGGAAAGAAGTGAAAACTGTCCAGTTTGTGGAAAGGTGATGGTCTTCGATGAAACGAGCTAG 684 0.405 MGSVCCCLSVDDFGDYMNPNSSVYRNCMCLGSFVQNFLNMSSSVFRRGEVLSLPSSIPGAASVISTASLDNSLSDTYRSPPRPLPYDADPRYLHLQRDALVSRHEKGSSHSNEESEPLRSDIDAESDPLNQRDKWNRSTCGDASKGYHSKTPMKLSSTIYTTEVAQIYASSEDEDVCPTCLEEYTPENPKILTKCSHHFHLGCIYEWMERSENCPVCGKVMVFDETS* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01423 227 CDD RING-H2_AIRP1-like 173 221 - -
Pte13g01423 227 Pfam RING-H2 zinc finger domain 174 217 IPR024766 GO:0008270
Pte13g01423 227 SUPERFAMILY RING/U-box 170 223 - -
Pte13g01423 227 SMART ring_2 177 217 IPR001841 -
Pte13g01423 227 MobiDBLite consensus disorder prediction 133 147 - -
Pte13g01423 227 MobiDBLite consensus disorder prediction 103 132 - -
Pte13g01423 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 224 IPR013083 -
Pte13g01423 227 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Pte13g01423 227 FunFam E3 ubiquitin-protein ligase At3g02290-like 154 224 - -
Pte13g01423 227 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 60 225 - -
Pte13g01423 227 MobiDBLite consensus disorder prediction 103 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01423 Pte-Chr13 25398368 25401359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01423 1 226 C3H Transcription Factor Family AT5G15790 58.009 6.57e-88 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01423 - - mnt:21401143 364.77