Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01418 ATGGCGAGGTCTAGGAAACATCATCAAGGAGAATCAGAAGATGGTGAACACCTTACTGGAAATGGGTCCACTTCTTCACATCATAAAGTGAAGGTGGATGAAGAAGTCAACAGGCTAGAGAAAACAAACGCTTACCGCTCTAAGCATTCAGAAACTGAGCAACGCAGAAGAAGCAAAATCAATGAAAGATTTCAAGTCCTGAGAGATCTCATTCCGCAAAATGATCAGAAAAGAGATAAGGCTTCACTCTTGATGGAGGTTATAGAATACATTCAGTTTTTACAGGAGAAGTTACGCATATATGAAGGGTCTCACCAGGGATGGAATCAGGAGCCATCAAAGCTGATTCCATGGGTAAAGTTTTATTATGATGTCTGTCATTTCTTTTTGTTTTGGGTGAACTGA 405 0.4025 MARSRKHHQGESEDGEHLTGNGSTSSHHKVKVDEEVNRLEKTNAYRSKHSETEQRRRSKINERFQVLRDLIPQNDQKRDKASLLMEVIEYIQFLQEKLRIYEGSHQGWNQEPSKLIPWVKFYYDVCHFFLFWVN* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01418 134 CDD bHLH_AtBIM_like 43 118 - -
Pte13g01418 134 MobiDBLite consensus disorder prediction 27 58 - -
Pte13g01418 134 Pfam Helix-loop-helix DNA-binding domain 46 95 IPR011598 GO:0046983
Pte13g01418 134 MobiDBLite consensus disorder prediction 1 58 - -
Pte13g01418 134 MobiDBLite consensus disorder prediction 1 15 - -
Pte13g01418 134 Gene3D - 40 115 IPR036638 GO:0046983
Pte13g01418 134 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 4 128 IPR044295 GO:0003700|GO:0006351|GO:0046983
Pte13g01418 134 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 44 94 IPR011598 GO:0046983
Pte13g01418 134 SMART finulus 50 100 IPR011598 GO:0046983
Pte13g01418 134 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 41 115 IPR036638 GO:0046983
Pte13g01418 134 FunFam BHLH domain class transcription factor 42 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01418 Pte-Chr13 25318238 25321456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01418 43 118 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G38860 76.923 4.81e-37 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte13g01418 HLH 5.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01418 - - qsa:O6P43_009208 169.859