Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01406 ATGGGAACACAGAGAAAAGAGGCTGCTTTCCTGGTTCTGGTACTTCTTTCGTTTTGGAGCTCTGCAAATGCATTACTTTCTCCCAAAGGTGTGAACTTTGAAGTGCAAGCTTTAATGGACATAAAGAATTCTTTGGAAGATCCTCGTGGGGTTTTAGATAACTGGGATGTGAATGCTGTGGATCCATGTAGCTGGACCATGGTCACTTGTTCTCCGGAGAGCTTCGTCATTGGCCTGGGTACTCCAAGCCAAAATTTATCTGGTACTCTATCTCCGAGCATAGGCAACCTGACAAATCTACAAGTCGTGCTGCTACAGAACAATAACATAACAGGACCAATTCCTTCAGAACTGGGGAGACTGAGAAAACTGCAAACGCTTGACCTTTCTAGTAACTCATTTTTTGGAGAAATTCCTTCCTCTCTTGGTCACTTGAGAAGTCTTGAATACTTGAGGCTTAATAATAACAGTATCTCTGGAGCATGCCCTCTCTCATTGGCTAACATGACCCAGCTTGTCTACCTTGACTTGTCCTACAATAATCTCAGTCGCCCAGTACCAAAATTTTCAGCAAAGGCATTCAACATTGTTGGAAACCCTTTGATCTGCGCAACTGGTGCTGAAGTAGAATGCAGTGGGATGGAACTGCTTCCTATGTCCATGAACTTGAATAGAACTCAAACTGCTCTTCCTCTTGGTAGACCTAAAACTCACAAAATGGCACTAGCCTTTGGTTTGAGCTTAGGATCCCTTTGTCTCGTAGTTATCATATTTGGGTTCATATTATGGTGGAAACACAAACGCAATCAACAGATGTTCTTTGATGTCAAAGAACGGCATCATGAGGAAGTATACCTTGGAAACTTGAAGAGATTCCAATTCAGGGAACTCCAGATTGCTACAAACAACTTCAGCAGCAAAAACATTCTTGGAAAGGGAGGTTTTGGAAATGTCTACAAGGGACTTCTCACAGATGGATCTGTTGTTGCTGTCAAGAGGCTTAAAGATGGTAATGCCATTGGAGGAGAGATACAGTTTCAGACAGAAGTAGAAATGATCAGTTTAGCCGTGCATAGAAACCTCCTCAGACTGTATGGGTTCTGCATGACCCCAACAGAAAGGCTTCTAATTTATCCATACATGTCCAACGGCAGTGTCGCTTCTCGTCTCAAAGGGAAACCAGTCTTGGATTGGTGCACAAGGAAGCGAATTGCTTTAGGAGCAGCAAGGGGATTACTGTACCTGCATGAGCAATGTGATCCGAAAATAATTCACAGAGATGTCAAAGCAGCAAATATATTGCTTGATGATTATTGTGAGGCTGTGGTTGGTGATTTTGGTTTAGCAAAGCTTTTGGATCACCAAGACTCACATGTCACAACTGCGGTTAGGGGCACAGTAGGGCATATAGCTCCTGAGTATCTTTCCACTGGGCAGTCCTCTGAAAAAACTGATGTATTTGGTTTTGGCATTCTACTTCTTGAATTGATCACTGGACAGAGAGCTTTAGAATTTGGCAAAGCAGCTAACCAGAAAGGCGCAATACTTGATTGGGTTAAGAAAGTTCATCAAGAGAAAAAACTAGAATTGCTTGTGGACAAGGACCTCAAGAACAACTATGACCGTATAGAACTTGAGGAAATGGTTAAAGTGGCTCTCTTATGCACACAATACCTTCCTGGCCACAGACCCAAAATGTCAGAAGTAGTTCGCATGCTGGAAGGTGATGGGCTAGCTGAAAGATGGGAAGCATCACAGAGAGCTGACTCAAGTAAATCCAAACGTTATGAATTTTCTTTATCAGATAGATATTCTGATCTTACAGATGACTCTTCACTATTGGTAAAAGCAATGGAGCTGTCAGGTCCAAGATGA 1875 0.4256 MGTQRKEAAFLVLVLLSFWSSANALLSPKGVNFEVQALMDIKNSLEDPRGVLDNWDVNAVDPCSWTMVTCSPESFVIGLGTPSQNLSGTLSPSIGNLTNLQVVLLQNNNITGPIPSELGRLRKLQTLDLSSNSFFGEIPSSLGHLRSLEYLRLNNNSISGACPLSLANMTQLVYLDLSYNNLSRPVPKFSAKAFNIVGNPLICATGAEVECSGMELLPMSMNLNRTQTALPLGRPKTHKMALAFGLSLGSLCLVVIIFGFILWWKHKRNQQMFFDVKERHHEEVYLGNLKRFQFRELQIATNNFSSKNILGKGGFGNVYKGLLTDGSVVAVKRLKDGNAIGGEIQFQTEVEMISLAVHRNLLRLYGFCMTPTERLLIYPYMSNGSVASRLKGKPVLDWCTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGAILDWVKKVHQEKKLELLVDKDLKNNYDRIELEEMVKVALLCTQYLPGHRPKMSEVVRMLEGDGLAERWEASQRADSSKSKRYEFSLSDRYSDLTDDSSLLVKAMELSGPR* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01406 624 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524
Pte13g01406 624 Gene3D Transferase(Phosphotransferase) domain 1 381 593 - -
Pte13g01406 624 Pfam Leucine rich repeat 140 182 IPR001611 GO:0005515
Pte13g01406 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672|GO:0006468
Pte13g01406 624 ProSiteProfiles Protein kinase domain profile. 304 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte13g01406 624 Pfam Protein kinase domain 305 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte13g01406 624 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 584 - -
Pte13g01406 624 FunFam Somatic embryogenesis receptor kinase 1 273 380 - -
Pte13g01406 624 FunFam Putative LRR receptor-like serine/threonine-protein kinase 31 213 - -
Pte13g01406 624 FunFam Somatic embryogenesis receptor-like kinase 1 381 593 - -
Pte13g01406 624 SMART serkin_6 304 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte13g01406 624 Gene3D Phosphorylase Kinase; domain 1 273 380 - -
Pte13g01406 624 SUPERFAMILY Protein kinase-like (PK-like) 282 574 IPR011009 -
Pte13g01406 624 SMART LRR_typ_2 97 121 IPR003591 -
Pte13g01406 624 SMART LRR_typ_2 145 168 IPR003591 -
Pte13g01406 624 SMART LRR_typ_2 169 192 IPR003591 -
Pte13g01406 624 Pfam Leucine rich repeat N-terminal domain 34 71 IPR013210 -
Pte13g01406 624 SUPERFAMILY L domain-like 34 196 - -
Pte13g01406 624 Gene3D Ribonuclease Inhibitor 31 213 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01406 Pte-Chr13 25220094 25224182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01406 20 625 Receptor kinase-like Gene Family AT5G16000 79.282 0.0 999
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Pte13g01406 Pkinase 9.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01406 - - rcu:8281260 1058.51