Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01395 ATGGAGGACGAAAAAGATCAACACCGAACCTCTTCCCGCTCTCAACATCATCAATTGGAATCTCTCACTCACAGTCACATGTTTCCAATCGAAAGCATGAAGGATGTGGTTGCTACAGTGAGTGGCTACCACGGCGTGGAGCGATTTAATCTCATCAAGTTGATAGCTCATTCTGGTGCAAGCTATGTCGGTAACATGTCAAGATCGATTACACATTTGGTTTGTTGGAAATTTGAAGGAAAGAAATATGAACTGGCCGAGAAGCTTAACACTGTCGTAGTTAATCATCGATGGATTGAGGATTGTATAAAGCAAGGAAAGCGGTTGCCGGAGCATCCGTATGTTACTAAAAGTGGGCAAGAAGTTGGACCTATCTCGTTGGAGGCTCCTCTAGTTGTCGAGGCTTGTGCCTCACACAAGAAGAAGATGGTCTCTGACAATTCAAATCATGATTACTCAGGAAAATCAACAAGATTTGGTTCTCAAGCATTTAGCAATCCTGTTTGGACTGATTCGTTTTTGATAAATGAGAATGTAATTCCAGGATCTCAGCAAAATGGAGATGTATCCTGTAAACCTAAACGTAGAATCAGTAAGAACTCGAACAAAGTTAATCAGTCTGGAAGCAGATCTTTCACTGCTGATAATCCTTTTCCTAATCAAGACAGACCAAAGTTTGGTGTTTCGTTATTTTTCCTCTATAATCTGTACAAGCACAAGGAGTCAAGTTCTTATGTTTTGGAGAACTTGGTAAGGGACAAAAGGAAGATATCTAATATTGATGTAGCTGCTGCTTCTGCAAAATTTTCTTGCAAAGGAAGGAGACTAGTGAAAAAGAATCCTGATAGAGAGGTGTTGGGACTTCAAGCTCTAGATGCTGGTGTCAGGTGCAACATTAATACAAATCAAAGACAACATAGCAATGATCCAGCTCACTCTCACTCGTCCAATGACATGAGGGATGCAAATGTTATAGAAAGTAGAGTAGGAGCTGATGAATGGCTGTATAATCAAAGCAGAGTTTTGGATGAATCTTATGATTATGGTGATGTTATGGAGAATAATGATGAAGAATCACCTGATCCTATTAAGAAAACATCAAATGGCATATGTTCCAGTGTTGAAAAATCAGGAGGCATCACTAGTGGGAGTAATCCTGATTATGCTGCCAGGGCACTGACTTCTCCAGAGTTATCATGTGTCATTTGCTGGACAGATTTCAGTTCAACTAGAGGAATCTTGCCATGTGGACACCGGTTTTGCTATTCCTGTATACAGGAGTGGGCTGATCATATGGCTTCAAGTGGCAGAGCTCTAACTTGTCCTCTATGCAAGGCAAGCTTTACAAACATCATGAAAGTTGAAGATGCTGAACATACTGATCAAAAAGTATACTCCCAAACAATTCCATATGATGCTTCAGTTTCAGAGATTACAATACTCAGGGATCGAGCAACTCCTTATTTTAGTGGTCAGTCCTCATCTACAGTTATTTGTTGTGTTTGCTTAAGTCGGGAACCTGAGGATATGCTTATCAGATGCAATTTCTGTCAGAATCGACAAATTCACTCCTACTGCCTCGATCCCTATCTGTTACCATGGGCCTGCAGCCAATGCAAAGATCTTCAGATGATGTACTGCCGTTTTCGTTGA 1653 0.4077 MEDEKDQHRTSSRSQHHQLESLTHSHMFPIESMKDVVATVSGYHGVERFNLIKLIAHSGASYVGNMSRSITHLVCWKFEGKKYELAEKLNTVVVNHRWIEDCIKQGKRLPEHPYVTKSGQEVGPISLEAPLVVEACASHKKKMVSDNSNHDYSGKSTRFGSQAFSNPVWTDSFLINENVIPGSQQNGDVSCKPKRRISKNSNKVNQSGSRSFTADNPFPNQDRPKFGVSLFFLYNLYKHKESSSYVLENLVRDKRKISNIDVAAASAKFSCKGRRLVKKNPDREVLGLQALDAGVRCNINTNQRQHSNDPAHSHSSNDMRDANVIESRVGADEWLYNQSRVLDESYDYGDVMENNDEESPDPIKKTSNGICSSVEKSGGITSGSNPDYAARALTSPELSCVICWTDFSSTRGILPCGHRFCYSCIQEWADHMASSGRALTCPLCKASFTNIMKVEDAEHTDQKVYSQTIPYDASVSEITILRDRATPYFSGQSSSTVICCVCLSREPEDMLIRCNFCQNRQIHSYCLDPYLLPWACSQCKDLQMMYCRFR* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01395 550 MobiDBLite consensus disorder prediction 1 15 - -
Pte13g01395 550 MobiDBLite consensus disorder prediction 184 219 - -
Pte13g01395 550 SMART ring_2 499 539 IPR001841 -
Pte13g01395 550 SMART ring_2 400 444 IPR001841 -
Pte13g01395 550 Pfam Ring finger domain 399 445 IPR001841 -
Pte13g01395 550 SUPERFAMILY RING/U-box 392 455 - -
Pte13g01395 550 SUPERFAMILY BRCT domain 31 116 IPR036420 -
Pte13g01395 550 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 385 475 IPR013083 -
Pte13g01395 550 MobiDBLite consensus disorder prediction 200 218 - -
Pte13g01395 550 MobiDBLite consensus disorder prediction 1 21 - -
Pte13g01395 550 ProSiteProfiles BRCT domain profile. 33 116 IPR001357 -
Pte13g01395 550 Gene3D BRCT domain 31 115 IPR036420 -
Pte13g01395 550 ProSiteProfiles Zinc finger RING-type profile. 400 445 IPR001841 -
Pte13g01395 550 SMART BRCT_7 30 106 IPR001357 -
Pte13g01395 550 Pfam twin BRCT domain 36 98 IPR001357 -
Pte13g01395 550 ProSitePatterns Zinc finger RING-type signature. 416 425 IPR017907 -
Pte13g01395 550 SUPERFAMILY FYVE/PHD zinc finger 490 541 IPR011011 -
Pte13g01395 550 PANTHER F5A8.9 PROTEIN 11 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01395 Pte-Chr13 24749472 24753727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01395 70 114 Core DNA Replication Machinery Family AT4G02110 58.696 2.92e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01395 - - qsa:O6P43_009244 467.618