Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01387 ATGACTGCTGAGCCTCCCAGATCTTCAAGTTCGTCGGCAGATTCCTATGTCGGCAGCTTGATAAGCTTAACTTCGAAGTCTGAAATTCGTTACGAGGGCATTCTCATCAGTGTCAATACAGAAGAGTCCAGCATCGCTTTGAGAAATGTCAGATCATTTGGAACTGAAGGGCGGAAGAAAGATGGTCCCCAAGTTCCTCCAAGTGATAAAATTTATGAGTATATACTATTCCGTGGCAGTGATATCAAGGATTTGCAAGTCAAATCTTCTCCACCAGTTCAGAGTACGATGTCTGTACCAAATGATCCTGCAATCATACAATCTCACTATCCTCAAGCACCAATAACTTCTACAAGTTTACCTTCTTCTGCTAGTGGTAGTGGATCTGTTCAAGATCCAAGTGTCCATACAGCACAGATGGGGCTCCCCAGGCCCACATTTCAAGGGAATCTTCCCTTATATCAACCTAGTGGAAATTTAGGCTCCTGGAATCCATCACAACCTCCTGTCCCGGCCAATAATGTGAGTGGGCTTGCCATGCCTATGTATTGGCAAGGTATGTACGGTTCCTCAAATGGGTTGCAACCCCAGGCACAGCAACATTCTTTGCTTCGACCACCACCTGGCTTGTCAATGCCAACTATGCAGCAAACAATGCATTATTCTCCAGTTACTGCATCATTCCCCAATGTGCCTTCAAACTTGTCAACCTCGAAATTGGCAGAACCACCATCTGCTCTATTACCACCCTTTAGTATGGGTACCCCAAATCTACCATCTTCTATACTTCCTATGCAGTCACCAGCTCTAACTTCAGACTCATTGGCCAGTTTAATTCCAAACAAGTCTTCTAATCAGACTCTTCCTCCTGCTCCCTTGACTTCAAGCTTGCCACTGGCACCTTCATTGAGTACTATGTTGGACAAATCCGCTATTTCACCTTCTATTTCTGATAAATCAAAGACAATTCCTGGTCCTATTTTAACACACTTGACTGTCTCTGAGACAGTGGCCTCACTTGCTGGTACATCAACTTCCTATCTCAACGAGGGACAAATTCCATCTTTAGTGACCCCTGGGCAGCTGTTGCATTCTACACCCACTGCACTAAATACATCACAGCCTTCACTTACTGCTCAAAAGGATGTAGAGGTGGTCCAGATATCATCACCAGAGTTGACACCAACATCAGTGCTGACTGAAACAAGGATACAAGAACCAATATTGCCTCTACCCCCACCATCCGAACGAAAGATACACGGAGCTTCTTCACAGAATCATTATATGCAGCGTGGAGGACGTGAAAGAGGCAGAGGAAACAGGGTTTCCCGACCTGTTACTAGATTCACAGAGGATTTCGACTTTACTGCAATGAATGAGAAATTCAACAAGGATGAAGTTTGGGGTGATCTTGGTAAAAGCAGCAGAGTTGTCGAAGATGGAGATATGAATGATGAGGATGAGAATGGGTCACCCAAAAATGAGTCCAAGCCTGTGTATGTCAAGGATGATTTCTTCGATTCCCTTTCTTGTGATTCTCTTGACCATGGCTCTCGAAATGGAAGGACCAGACATTTGGTTATATGCCAAGGCATCGTGGTGGTCGAGGAGGCCGTGGACCTGGTTATGGTGGCCGAAACCGCGGTGGTTACCATGGAAGGGGACATGGATATGACATTAAACCTCGCTATAGTCGTCGTCGACCTCAACAATGGCGGAACAGACAGAGAAGGCATTTTTGAAGTAGCCCAAGGAACTATTTCTATCAGAGGTCGTATTCTTGCTGGTACTTGCCATAGTGCTAAGATGGTTCAGACAATTATTGTGCGCAGGAATTATCTCCACTATATCAAGAAATACCAAAGGTACGAGAAGAGGCATTCAAACATAGCAGCTCATATCTCTCCTTGTTTTCGTGTGAAGGAGGACCATGTCATTATTGGACAGTGCAGACCATTGTCAAAGACCGTACACCCTGTTCTAATGGTGATAGGACTTGTTCTGATTAATGGTGAAGCTATGCTTGCTTACAAAACAATTTCAGGAACGAAAAGCTTCAGAAAATCAGTTCATCTTACATTGCAATTCTTTGCTTTCTGTTCAAGTCTAATTGGTGTGTGGGCTGCATTGAAGTTTCACAATGATAAGGGGATTGACAACTTCTATAGCCTGCACTCATGGTTGGGCATACTTTGTCTCCTACTGTTCTCCATCCAGTGGGCTAGTGGGTTTGCAACCTTTTGGTATCCAGGAGGAACCAGAATTAGCAGAGCTTCCCTTTTACCATGGCATGTCTTCTTCGGGGTCTATATCTATGCTTTTGCTCTTGCCACAACAGTCACCGGGATTCTGGAAAAGGCTACATTCCTTCAAACTAACCAAATAATATCACGTTATTCCAATGAATCCATGCTTCTTAACTCTTTGGGTATGTTGATAGTGCTCCTGGGTGGTCTTGTTATCCTTGGAGTCCTTGCTCCATTAAATGGGAAAGCTGATATTCCTAGATGA 2511 0.4429 MTAEPPRSSSSSADSYVGSLISLTSKSEIRYEGILISVNTEESSIALRNVRSFGTEGRKKDGPQVPPSDKIYEYILFRGSDIKDLQVKSSPPVQSTMSVPNDPAIIQSHYPQAPITSTSLPSSASGSGSVQDPSVHTAQMGLPRPTFQGNLPLYQPSGNLGSWNPSQPPVPANNVSGLAMPMYWQGMYGSSNGLQPQAQQHSLLRPPPGLSMPTMQQTMHYSPVTASFPNVPSNLSTSKLAEPPSALLPPFSMGTPNLPSSILPMQSPALTSDSLASLIPNKSSNQTLPPAPLTSSLPLAPSLSTMLDKSAISPSISDKSKTIPGPILTHLTVSETVASLAGTSTSYLNEGQIPSLVTPGQLLHSTPTALNTSQPSLTAQKDVEVVQISSPELTPTSVLTETRIQEPILPLPPPSERKIHGASSQNHYMQRGGRERGRGNRVSRPVTRFTEDFDFTAMNEKFNKDEVWGDLGKSSRVVEDGDMNDEDENGSPKNESKPVYVKDDFFDSLSCDSLDHGSRNGRTRHLVICQGIVVVEEAVDLVMVAETAVVTMEGDMDMTLNLAIVVVDLNNGGTDREGIFEVAQGTISIRGRILAGTCHSAKMVQTIIVRRNYLHYIKKYQRYEKRHSNIAAHISPCFRVKEDHVIIGQCRPLSKTVHPVLMVIGLVLINGEAMLAYKTISGTKSFRKSVHLTLQFFAFCSSLIGVWAALKFHNDKGIDNFYSLHSWLGILCLLLFSIQWASGFATFWYPGGTRISRASLLPWHVFFGVYIYAFALATTVTGILEKATFLQTNQIISRYSNESMLLNSLGMLIVLLGGLVILGVLAPLNGKADIPR* 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01387 836 SMART LSM14_2 10 110 IPR025609 -
Pte13g01387 836 MobiDBLite consensus disorder prediction 408 442 - -
Pte13g01387 836 SMART FDF_2 447 552 IPR019050 -
Pte13g01387 836 Pfam Scd6-like Sm domain 16 89 IPR025609 -
Pte13g01387 836 CDD LSm14_N 13 87 IPR025609 -
Pte13g01387 836 ProSiteProfiles FFD box profile. 498 513 IPR025761 -
Pte13g01387 836 ProSiteProfiles Cytochrome b561 domain profile. 623 825 IPR006593 -
Pte13g01387 836 FunFam Trailer hitch, isoform C 10 92 - -
Pte13g01387 836 MobiDBLite consensus disorder prediction 475 498 - -
Pte13g01387 836 FunFam Cytochrome b reductase 1 646 833 - -
Pte13g01387 836 CDD Cyt_b561_ACYB-1_like 656 791 - -
Pte13g01387 836 PANTHER SCD6 PROTEIN-RELATED 11 524 - -
Pte13g01387 836 SMART 561_7 657 783 IPR006593 -
Pte13g01387 836 ProSiteProfiles Sm domain profile. 8 91 IPR047575 GO:0003723
Pte13g01387 836 MobiDBLite consensus disorder prediction 113 167 - -
Pte13g01387 836 ProSiteProfiles DFDF domain profile. 441 477 IPR025762 -
Pte13g01387 836 Gene3D - 617 835 - -
Pte13g01387 836 Gene3D - 7 92 - -
Pte13g01387 836 Pfam Eukaryotic cytochrome b561 657 789 IPR006593 -
Pte13g01387 836 SUPERFAMILY Sm-like ribonucleoproteins 15 92 IPR010920 -
Pte13g01387 836 PRINTS Ribosomal protein S17 family signature 642 652 IPR000266 GO:0003735|GO:0005840|GO:0006412
Pte13g01387 836 PRINTS Ribosomal protein S17 family signature 610 633 IPR000266 GO:0003735|GO:0005840|GO:0006412
Pte13g01387 836 PRINTS Ribosomal protein S17 family signature 652 659 IPR000266 GO:0003735|GO:0005840|GO:0006412
Pte13g01387 836 SUPERFAMILY Nucleic acid-binding proteins 590 661 IPR012340 -
Pte13g01387 836 Pfam FDF domain 449 522 IPR019050 -
Pte13g01387 836 Pfam Ribosomal protein S17 596 658 IPR000266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01387 Pte-Chr13 24498634 24511586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01387 657 834 Chloroplast and Mitochondria Gene Families AT5G38630 69.663 1.01e-90 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01387 K18749 - qsu:112024794 630.172