Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01372 ATGGCGATGGGCTCTTCTTCTGGTAGCTTAGACACTTCTGGAAATTCTCATCCAAGTTTCGCTTTCTCTTCTCATCCTTTTATGACTGCTTCTTTCGCTGACCTTTTGGCTTCACCTGTTGAAGGAAACCCCACTAGTAGTGATAACAAACAACAACGCAGTGGTGGTTTGGGAGACCGTATAGCAGAGAGAATTGGGTCTGGCGTTCCAAAGTTTAAGTCAATCCCACCGCCCTCTTTGCCTATCTCTCCTCCTGCTTTTTCTCCTTCTTCATATTTTGCTATCCCAGCTGGGTTGAGTCCTGCTGACCTATTGGACTCACCTGTCCTTCTTAACTCTTCTAATATTCTGGTATCTCCAACTACTGGAGCATTTGCTGCTCAGTCCTTTAATTGGAAAAGCAGCAATTCTGGTGATAACCAGCAGAGTATTAAGCAAGAAGACAGAGGCTTCACAAGTTTCTCTTTTCAACCTCAACCAAGGCCACCACCTCCTTCATCAACTGCTGTGTTTCAATCTTCAGTCAACGCAAACCAAACTGGACAGCAACAAGCATGGAGTTTTCAAGAGGCTACCAAGCAAACCAGTTTTTCCTCGGGGAAGGGTATTGTTAAATCAGAAAACCCTTCTGGTCAGAGCTTTTCCCCTGAGATTGCTACCATACAGAACAATACACAAAGCAAGAACAATGGGATCCAACCAGGTTACAACAACTACCATCATCAACAACCTCAAGTTCTGAGCAGAAGGTCGGATGATGGGTACAACTGGAGAAAGTATGGTCAAAAACAAGTGAAAGGAAGTGAAAATCCAAGGAGTTATTACAAGTGCACATACCCCAGTTGCCCAACGAAGAAGAAAGTTGAGAGATCTTTAGATGGTCAGATAACTGAGATAGTTTACAAGGGTACTCATAACCATCCTAAGCCTCAGTCCATCAGAAGATCCTCATCCTCATCCAATTCTCTGCAAATGATACCATCAAACCCTGCTAGCAATGAAATCCCAGATCAATCATTTGTTACTCATGGATCTGGACAAATGGATTCTGTTGCAACAACTGAGAACTCATCAATATCCATGGGAGATGATGAATTTGACTCACAGAGAAGTAAATCTGTTGGCGATGAATTTGATGAGGATGAGCCTGATGCCAAAAGATGGAGAAAGGAGAGTGAAAATGAAGGAATTTCAGCTGCAGGGAGTAGAACAGTTAGAGAACCAAGAGTGGTAGTTCAAACAACTAGTGATATTGATATTTTGGATGATGGATATAGATGGAGAAAATATGGACAGAAAGTAGTCAAAGGAAATCCAAATCCGAGGAGTTATTACAAGTGCACATACCCTGGATGTCCTGTGAGAAAGCATGTCGAGAGAGCATCACACGACTTAAGAGCAGTGATTACTACCTACGAAGGAAAGCACAACCATGATGTGCCTGCAGCTCGCGGCAGTGGCAGCCATTCAGTGAATAGACCTATCCTTAACAATGGGAACAACAGCAGCAATACCAATAACAACAGCAACATCAGCACAGCCGCCGCCATGAGGCCTATCTCCATTGCCTATCAACCTAACAATTCAGTCAGTAACCCTGTCCAGAGTTATAGGCCACCCACAACATCAGAAGGGCAATCAGCATTTGGACTTGATATGCTGCCGAGTCCCGGCGGGAGCTTTGGATTCTCAGGGTTTGGGAATCAAATGGTTTCTTACACCAATCAGCAATCAGACAATGCATTCCCCCGAGCCAAAGATGAACCAAGGGATGACATGTTTCTTGAATCTTTGCTATGCTAA 1803 0.4387 MAMGSSSGSLDTSGNSHPSFAFSSHPFMTASFADLLASPVEGNPTSSDNKQQRSGGLGDRIAERIGSGVPKFKSIPPPSLPISPPAFSPSSYFAIPAGLSPADLLDSPVLLNSSNILVSPTTGAFAAQSFNWKSSNSGDNQQSIKQEDRGFTSFSFQPQPRPPPPSSTAVFQSSVNANQTGQQQAWSFQEATKQTSFSSGKGIVKSENPSGQSFSPEIATIQNNTQSKNNGIQPGYNNYHHQQPQVLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPSCPTKKKVERSLDGQITEIVYKGTHNHPKPQSIRRSSSSSNSLQMIPSNPASNEIPDQSFVTHGSGQMDSVATTENSSISMGDDEFDSQRSKSVGDEFDEDEPDAKRWRKESENEGISAAGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTYPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSHSVNRPILNNGNNSSNTNNNSNISTAAAMRPISIAYQPNNSVSNPVQSYRPPTTSEGQSAFGLDMLPSPGGSFGFSGFGNQMVSYTNQQSDNAFPRAKDEPRDDMFLESLLC* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01372 600 SMART WRKY_cls 421 480 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pte13g01372 600 SMART WRKY_cls 251 309 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pte13g01372 600 SUPERFAMILY WRKY DNA-binding domain 413 481 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pte13g01372 600 MobiDBLite consensus disorder prediction 225 253 - -
Pte13g01372 600 Pfam WRKY DNA -binding domain 252 308 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pte13g01372 600 Pfam WRKY DNA -binding domain 422 478 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pte13g01372 600 MobiDBLite consensus disorder prediction 477 511 - -
Pte13g01372 600 Gene3D WRKY domain 408 474 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pte13g01372 600 FunFam WRKY transcription factor 241 311 - -
Pte13g01372 600 Gene3D WRKY domain 238 311 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pte13g01372 600 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 105 508 IPR044810 GO:0003700
Pte13g01372 600 MobiDBLite consensus disorder prediction 310 364 - -
Pte13g01372 600 MobiDBLite consensus disorder prediction 301 401 - -
Pte13g01372 600 SUPERFAMILY WRKY DNA-binding domain 250 310 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pte13g01372 600 MobiDBLite consensus disorder prediction 490 511 - -
Pte13g01372 600 MobiDBLite consensus disorder prediction 365 396 - -
Pte13g01372 600 MobiDBLite consensus disorder prediction 38 80 - -
Pte13g01372 600 ProSiteProfiles WRKY domain profile. 416 481 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pte13g01372 600 MobiDBLite consensus disorder prediction 40 54 - -
Pte13g01372 600 ProSiteProfiles WRKY domain profile. 252 310 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pte13g01372 600 MobiDBLite consensus disorder prediction 225 250 - -
Pte13g01372 600 FunFam WRKY transcription factor 33 408 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01372 Pte-Chr13 23832521 23837068 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01372 249 599 WRKY Transcription Factor Family AT2G38470 54.098 2.55e-108 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pte13g01372 WRKY 2.7e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01372 K13424 - qsa:O6P43_014117 811.601