Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01355 ATGGCGACTTATGCTGCAATGAAGCCTGTCAAGCCCGGGTTTGAAGAAACCCAGGAGCAGATCCATAAGATCAGAATTACTCTTTCATCGAAGAACGTCAAAAACCTCGAGAAAGTTTGTGGTGATTTGTGTCGTGGTGCTAAGGACAAGAAGCTGCGAGTTAAGGGTCCAGTGAGGATGCCTACTAAGGTTTTGCTTATCACTACCCGTAAATCACCATGTGGAGAAGGTAATACTATTGATCTTCTTGTCGTCGTTCCATTGTGGATTTATTTCTGA 279 0.4373 MATYAAMKPVKPGFEETQEQIHKIRITLSSKNVKNLEKVCGDLCRGAKDKKLRVKGPVRMPTKVLLITTRKSPCGEGNTIDLLVVVPLWIYF* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01355 92 PRINTS Ribosomal protein S10 family signature 58 73 IPR001848 GO:0003735|GO:0005840|GO:0006412
Pte13g01355 92 PRINTS Ribosomal protein S10 family signature 23 36 IPR001848 GO:0003735|GO:0005840|GO:0006412
Pte13g01355 92 SMART Ribosomal_S10_2 25 91 IPR027486 -
Pte13g01355 92 Pfam Ribosomal protein S10p/S20e 25 79 IPR027486 -
Pte13g01355 92 SUPERFAMILY Ribosomal protein S10 23 81 IPR036838 -
Pte13g01355 92 Gene3D Ribosomal protein S10 domain 5 82 IPR036838 -
Pte13g01355 92 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 7 81 IPR001848 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01355 Pte-Chr13 23432189 23433933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01355 1 81 Cytoplasmic Ribosomal Protein Gene Family AT5G62300 81.928 5.52e-40 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01355 K02969 - gmx:100499912 144.05