Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01353 ATGTTCTCTAAAGGGATCACAAGGGAGCTCTCAATATCCACATGCTCTCATGAAGACTATCATGGAGGAGCATCAGCCTCAATTCCTTTCACGTGGGAATCTCAACCAGGTACTCCCAAAATCAAAACCAGTGAATATCCGTTGCCTCCTCTTACTCTACCACCATCTTACTATTCCAATACTGTTTCTAAAAGACCACTAGTTATTAGACAGAACTCCAAGGGAAACCTATTTCAAACAATCTTTCCCAAAAGGATCACTAGAAAAAAGTTTTCTCTATCTTCATCTCCAGCTTCCTCAACCTCATCGTCATCTTCGGTTAACTCCTCCTTCGCTTCTTCACCAAGGCCAACGTCATATTCAGTACCATCTTCTCCAATGGTCAATCCAATATATCGCGGGAAAAAGGAGATGCAGAGCGCTGGCCCCCGATTCTCATTTGGTTCAAGGTTTGATCATGAGGATGAAGAATATGATGGACGTGAACTGGCAATGTCAAACTTGATGAGCTTGGGCAATAATACAAGGTCATCCCAAGGTTGCTACTCTTTTCTGATGAAGAAGCTTTGTCATCAGCACCAAGATATTGTCATTAACAAAATCAACTGGAATGCTTGGATGCTCAAAGACAGGGAGAGATTGCATGAGATAGTCAAAAAGAGACGAAGAGAGTTAGAGATTGCAGCTTCTCCAATGGGAAGAAGATATCTATACGGTCCACCATCGTCTGGGTCAGCCTTGAATACTATCACTCCCTGTGCTGCCTGTAAACTCCTGAGAAGAAGATGTGCGGAGGAATGCCCTTTCTCTCCATATTTCTCACCCCACGAACCGCAGAAATTTGCTGCCGTCCACAAAGTCTTTGGCGCAAGCAATGTCTCAAAGTTGCTAATGGAGGTGCCAGAAAACCAAAGGGCTGATGCAGCAAATAGTCTTGTCTATGAAGCCAACTTGAGGTTGAGAGATCCGGTCTATGGATGCATGGGTGCAATATCTGCTTTGCAGCAACAGGTTCAATCTCTTCAAGCTGATCTAAATGCAGTGAGGGCTGAGATTTTGAAATACAAATATAGAGAGATATATAGGGAGGCTGCTGCAACTGGTAATAATATGATTTCTTCTCATCGTGCTGCTCTACTGTCATCTGGGGAAGACTCAATTCTTGCACCGCCACAGCAGGCTATTCCTCAACAACAGCCACCACCACCTTCAACTCCTCCTAAAAGCTTTCCTCCCCCTTCTACTGTCCTTCCGACGTTGTCTTCATCCTTTACATCTTCAGGATACTCACCTCCTAGCAGTACTTCAACATGTCCGGTACCAAATCGAAATAACAACAGCATTCCATATTTTGTTTAG 1359 0.4393 MFSKGITRELSISTCSHEDYHGGASASIPFTWESQPGTPKIKTSEYPLPPLTLPPSYYSNTVSKRPLVIRQNSKGNLFQTIFPKRITRKKFSLSSSPASSTSSSSSVNSSFASSPRPTSYSVPSSPMVNPIYRGKKEMQSAGPRFSFGSRFDHEDEEYDGRELAMSNLMSLGNNTRSSQGCYSFLMKKLCHQHQDIVINKINWNAWMLKDRERLHEIVKKRRRELEIAASPMGRRYLYGPPSSGSALNTITPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLMEVPENQRADAANSLVYEANLRLRDPVYGCMGAISALQQQVQSLQADLNAVRAEILKYKYREIYREAAATGNNMISSHRAALLSSGEDSILAPPQQAIPQQQPPPPSTPPKSFPPPSTVLPTLSSSFTSSGYSPPSSTSTCPVPNRNNNSIPYFV* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01353 452 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 248 396 - -
Pte13g01353 452 MobiDBLite consensus disorder prediction 415 452 - -
Pte13g01353 452 ProSiteProfiles LOB domain profile. 251 352 IPR004883 -
Pte13g01353 452 Pfam Lateral organ boundaries (LOB) domain 252 348 IPR004883 -
Pte13g01353 452 MobiDBLite consensus disorder prediction 392 452 - -
Pte13g01353 452 Coils Coil 331 351 - -
Pte13g01353 452 MobiDBLite consensus disorder prediction 93 126 - -
Pte13g01353 452 MobiDBLite consensus disorder prediction 394 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01353 Pte-Chr13 23407861 23410884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01353 215 359 AS2 family AT2G30340 70.667 1.13e-69 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pte13g01353 LOB 5.5e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01353 - - tcc:18591068 256.914