Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01349 ATGGGGTCTTTGATTTGCATGAATATATCTTGTGGGTCGTCTACGAGTCGTGACGGGAAGAAGGGTTGGCCTCTGCGATCCGGCGGATTCGCTCATCTCTGCTTTAATTGCGGATCTGCGTTTGAAAATTCAACCTTCTGTGATAAGTTCCATCTTGATGAAACTGGTTGGAGAGAATGCCACTTTTGCAAGAAGCGTGTGCATTGTGGGTGTATAGCGTCAAAAGCTTTATTTGAGCATCTTGATTTTGGGGGAATAAGCTGTACAAACTGTCGAAAGGTTTCCCAACATCATTTTATTCGAAATGCTGAAATTCCTAATGAGTTTGGTATGCTGACAAGCAATCATACTAGTGAGTCAGAACTGACTCAGGCTGGCAAACGGTTATTTATGGATAATGGTGATGAGGAAAAACTCATGCAATTGTGCAGAGTCATGGAAGCTAATGAATCCAATTTCAGTCTTCAACCGCTTAGAGATGAGATGAATGGTTCATGTGGGAAAATCAATCAAGAAGTTATGTCTCAGTTTGGGACAACAGAGACGGGATTGTCAAATGTGACTGAGGCATCTGTGCAACCATTGACATTTACTAAACTGGACAATGGTAGACTACTGTTGGAGAACAAGGATTTCCTGGAATCACCTGCCCCACCATCTCTAACTATGTCCTTGGGTGGACCACCGGGAAGCACCTTGCTGCCTTTGAACGGTGGGGTTGTAGAAGGAAAAGATCAAGGCAAAGCATCTCTTCTTTTTTCTCCAGGGCAACGAGTTCGACCTATATTGCCCAAACCTTCGAAGACTTACGATACAAACAAAGCATCAAATTCTCAGATGCGCATTGCTCGCCCTCCTGCTGAGGGACGCGGGAAGAATCAATTACTTCCTCGATACTGGCCCAGAATTACTGACCTTGAACTGGAGCAATTAGCTGGAGATTTGAATTCCACTGTAGTTCCATTGTTTGAGAAGCAGCTGAGTGCAAGTGATGCTGGTAGAATAGGACGTTTGGTTCTCCCAAAAGCTTGTGCAGAAGCATATTTTCCCCCTATCAATCAATCAGATGGAGTTCCTTTGAGGATGCAAGATGTGAAAGGAAATGAATGGACTTTTCAGTTTAGATTTTGGCCTAACAACAACAGCAGGATGTACGTTTTAGAGGGTGTAACTCCTTGCATACAGAATATGCAGTTAAAAGCCGGTGATACTGTAACATTTAGCCGCGTGGATCCAGGAGGCAAACTAGTCATGGGTTTTAGGAAGGCATCGAACTTAGAGGATACCCAGGATGCATCAGCATCTACCGATATCGATGGCACATATTCTAAAGAAAACATCTTTACTGGAGCAAATGAGAATCATCCATCAAGAAGCCACTCTGATGATCTTTCACCAGTGAAGGGAAGCAAAGAGACTCACTTAAATGCCCCATCAGAACATGTCCATTTGGCCAATGGTGATGCTGACCTGCCTGAGAGTTACAATCATGAGGGTGTGACTAATAATAGACCACTAAAGCAGCTGGTTACAGGTTCAGAAAAGAGGACCAGGAACATTGGGCCTAAAAACAAGCGGCTGCACATCCATAGTGAAGATGCTCAGGAGCTAACAATTACATGGGAAGAAGCACAGGACTTGCTTTGTCCACCACCAAGTGCCAAACTGAGCATTGTGACAATTGAGGACCACGTTTTTGAAGAATATGATGTGGCACCTATCTTGGCCAAGAAAACCGTGTTTTCAGCTCGACCTACTGGGGGTCAAGACCAATGGGCTCAATGTGATAACTGCCACAAATGGCGAAAGCTGCCAGTGGATGTACTTGTTCCCCTGAAGTGGACGTGTTCTGAAAATATCTGGAATGCAAGCAGGTCTGATTGTTCAGCACCAGAGCAGTTGACTCCCAAAGAAATGGAGAATTTTTCAAGAACCAGCAGAGAATTTAAGAAGCGAAGAACTTCAGCAAGTAACAAATCTGCAGGTGAGCAGCGTGAACCTACAGGCTTAGATGCTCTAGCAAGTGCTGCAGTGATGGGAGAAAATGTGGGCGAACCATCTGCTGGAGCAACTACTCGACATCCCCGACACCGCCCTGGCTGCACCTGCATTGTGTGCATACAGCCCCCAAGCGGTAAGGGTAAGCATAAGCCGAATTGTACTTGCAATGTGTGCTTGACTGTAAAACGCCGGTTTAGAACCCTCATGCTGAGAAAGAAGAAACGCCAATTGGATCGTGAAGCAGAAGCTGCACAGGAGAATCACAATCAAAATCAGAGATATGAGAGCGAGGCAAATGTCAACACAGCTAGAGATTTGCTGTCACAGACACAGGCAGCTGATTCGGGGAAGAAGCAAAGGACTACAAACAGAAACCAAACTGGCGTAATGCCGGGGGCTTCTGCAGGAGGGAACATAGACTTGAATTGTGATCCTAACCGTGAAGACAATCAAGTGGAGGACTCCATGAAGAACGGTACAAGCAGCTTTCTACCTGCCCGGCAGGATAACAGAATGTCCAGTTTTCTCCAACAGTCCACCAGAGAAGGTCAGAGTCATGTGACTGACGTACCTGTCATCTGGAGTCGTGTACACAGGGGGGGTGATGATCATCAAGGGAAAGATTCAAACGGGCATGAACTTTCTTAG 2649 0.4553 MGSLICMNISCGSSTSRDGKKGWPLRSGGFAHLCFNCGSAFENSTFCDKFHLDETGWRECHFCKKRVHCGCIASKALFEHLDFGGISCTNCRKVSQHHFIRNAEIPNEFGMLTSNHTSESELTQAGKRLFMDNGDEEKLMQLCRVMEANESNFSLQPLRDEMNGSCGKINQEVMSQFGTTETGLSNVTEASVQPLTFTKLDNGRLLLENKDFLESPAPPSLTMSLGGPPGSTLLPLNGGVVEGKDQGKASLLFSPGQRVRPILPKPSKTYDTNKASNSQMRIARPPAEGRGKNQLLPRYWPRITDLELEQLAGDLNSTVVPLFEKQLSASDAGRIGRLVLPKACAEAYFPPINQSDGVPLRMQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQNMQLKAGDTVTFSRVDPGGKLVMGFRKASNLEDTQDASASTDIDGTYSKENIFTGANENHPSRSHSDDLSPVKGSKETHLNAPSEHVHLANGDADLPESYNHEGVTNNRPLKQLVTGSEKRTRNIGPKNKRLHIHSEDAQELTITWEEAQDLLCPPPSAKLSIVTIEDHVFEEYDVAPILAKKTVFSARPTGGQDQWAQCDNCHKWRKLPVDVLVPLKWTCSENIWNASRSDCSAPEQLTPKEMENFSRTSREFKKRRTSASNKSAGEQREPTGLDALASAAVMGENVGEPSAGATTRHPRHRPGCTCIVCIQPPSGKGKHKPNCTCNVCLTVKRRFRTLMLRKKKRQLDREAEAAQENHNQNQRYESEANVNTARDLLSQTQAADSGKKQRTTNRNQTGVMPGASAGGNIDLNCDPNREDNQVEDSMKNGTSSFLPARQDNRMSSFLQQSTREGQSHVTDVPVIWSRVHRGGDDHQGKDSNGHELS* 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01349 882 ProSiteProfiles Zinc finger CW-type profile. 586 636 IPR011124 GO:0008270
Pte13g01349 882 MobiDBLite consensus disorder prediction 777 835 - -
Pte13g01349 882 SUPERFAMILY DNA-binding pseudobarrel domain 321 422 IPR015300 -
Pte13g01349 882 Gene3D - 582 635 - -
Pte13g01349 882 MobiDBLite consensus disorder prediction 743 765 - -
Pte13g01349 882 MobiDBLite consensus disorder prediction 627 668 - -
Pte13g01349 882 SMART B3_2 323 424 IPR003340 GO:0003677
Pte13g01349 882 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 4 833 - -
Pte13g01349 882 Pfam B3 DNA binding domain 323 422 IPR003340 GO:0003677
Pte13g01349 882 MobiDBLite consensus disorder prediction 641 659 - -
Pte13g01349 882 MobiDBLite consensus disorder prediction 456 474 - -
Pte13g01349 882 FunFam B3 domain-containing transcription repressor VAL1 301 428 - -
Pte13g01349 882 Pfam CW-type Zinc Finger 591 633 IPR011124 GO:0008270
Pte13g01349 882 Coils Coil 734 764 - -
Pte13g01349 882 Gene3D - 301 427 IPR015300 -
Pte13g01349 882 ProSiteProfiles B3 DNA-binding domain profile. 323 424 IPR003340 GO:0003677
Pte13g01349 882 CDD B3_DNA 321 422 IPR003340 GO:0003677
Pte13g01349 882 MobiDBLite consensus disorder prediction 777 799 - -
Pte13g01349 882 MobiDBLite consensus disorder prediction 447 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01349 Pte-Chr13 23269667 23276806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01349 1 771 B3 DNA Binding Superfamily AT2G30470 48.420 0.0 694
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pte13g01349 B3 1.4e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01349 K09287 - qsa:O6P43_014159 1051.97