Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01341 ATGGCTATACAAACCACTGTAAATCTATCAGAGCTTGCGATACTCGAAGAGGAAAAGTCTCTGAGACCCTCAACAAAAGCTGAAACGGAGCATGACCCACCATGCAAAACCAAGAGCAAAGTTCAGCAAAGGCTTTTGAGGATTATACTCACTGATGCTGACGCTACTGACTCTTCCAGTGACGAAGATGAAATCAGAAGAAGACCTGTGCGAAGAGTGAAAAGACATGTCAAAGAAATCAGCTTGGAGCTTCCTTCTTCGGACTATGCTCCTCCTTATTCTACTTCGTCTTCAGCTGGCTCATCAGGTCCACCTCAAAACAAATGGCCAAAGAGAACTTCAATAAGTAGTAACACGGGTAGAGTTTCTCGCCTGCGCAAGTACAGAGGGGTCCGGCAGAGACCTTGGGGACGATGGGCCGCTGAGATCCGTGACCCCAACCGGCGGAAACGGCTATGGCTGGGAACCTTCGATACGGCAGAAGAGGCTGCCACTGTGTACGACAAGGCAGCGCTGAAACTTAAGGGTCGCAACGCGATCACGAATTTTCCTAACTCCGTGATAAGGGAGACTCCTGCAGTTGATACCGCCAGTGCGGATAGTGTGAGCACTCCAGATGCGTGTGTTGCCTTGTCATCACCAACTTCAGTCCTCCGTTTTGTCGACGGTTCAACGCCGTTTGATGGCTTTGGTTGCGGCGAAGTTGACGCCTTCGGTGTCGGCATCGACATGCCCTTAAGTTGGCCAGGAGTGCTCTTCTCTGGTCAGCGCTTAGGCAAAGAAGAATTCAGCGAGTTTGACATAGACGAGTTCTTAGTGGACATCGCGTCATGA 834 0.5036 MAIQTTVNLSELAILEEEKSLRPSTKAETEHDPPCKTKSKVQQRLLRIILTDADATDSSSDEDEIRRRPVRRVKRHVKEISLELPSSDYAPPYSTSSSAGSSGPPQNKWPKRTSISSNTGRVSRLRKYRGVRQRPWGRWAAEIRDPNRRKRLWLGTFDTAEEAATVYDKAALKLKGRNAITNFPNSVIRETPAVDTASADSVSTPDACVALSSPTSVLRFVDGSTPFDGFGCGEVDAFGVGIDMPLSWPGVLFSGQRLGKEEFSEFDIDEFLVDIAS* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01341 277 Gene3D AP2/ERF domain 126 186 IPR036955 GO:0003700|GO:0006355
Pte13g01341 277 MobiDBLite consensus disorder prediction 17 38 - -
Pte13g01341 277 MobiDBLite consensus disorder prediction 17 70 - -
Pte13g01341 277 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 42 220 - -
Pte13g01341 277 CDD AP2 127 186 IPR001471 GO:0003700|GO:0006355
Pte13g01341 277 Pfam AP2 domain 127 176 IPR001471 GO:0003700|GO:0006355
Pte13g01341 277 FunFam Ethylene-responsive transcription factor 2 126 185 - -
Pte13g01341 277 MobiDBLite consensus disorder prediction 88 123 - -
Pte13g01341 277 PRINTS Ethylene responsive element binding protein signature 128 139 IPR001471 GO:0003700|GO:0006355
Pte13g01341 277 PRINTS Ethylene responsive element binding protein signature 150 166 IPR001471 GO:0003700|GO:0006355
Pte13g01341 277 MobiDBLite consensus disorder prediction 85 124 - -
Pte13g01341 277 PIRSF PTI6 19 276 IPR017392 GO:0003700
Pte13g01341 277 ProSiteProfiles AP2/ERF domain profile. 127 184 IPR001471 GO:0003700|GO:0006355
Pte13g01341 277 SMART rav1_2 127 190 IPR001471 GO:0003700|GO:0006355
Pte13g01341 277 SUPERFAMILY DNA-binding domain 127 186 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01341 Pte-Chr13 23170098 23172460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01341 1 220 AP2-EREBP Transcription Factor Family AT4G27950 42.609 6.37e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte13g01341 AP2 2.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01341 K13434 - qsa:O6P43_020468 270.396