Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01334 ATGCTTTCATGTGCTGGAGCTGATAGGCTTCAGACTGGTATGAGGGGTGCTTTTGGAAAGCCACAGGGTACTTGTGCCAGAGTTGACATTGGTCAAGTCCTACTTTCTGTTCGATGCAAGGACAGCAACAGTCATCATGCTCAGGAGGCACTTCGCCGTGCTAAGTTCAAGTTTCCTGGTCGACAAAAGATCATTGTCAGCAGAAAGTGGGGATTCACCAAGTTTAACCGCAATGATTATGTGAGGTTGAAGAAAGAGAACCGTATTCTCCCAGATGGTGTAAATGCAAAGCTGCTTGGATGTCATGGACCTCTCTCAAATCGTGAACCTGGACAAGCGTTCTTAGAAGCTGCTGTCTAG 360 0.4694 MLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRNDYVRLKKENRILPDGVNAKLLGCHGPLSNREPGQAFLEAAV* 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01334 119 Pfam Ribosomal protein L16p/L10e 5 65 IPR016180 GO:0003735|GO:0005840|GO:0006412
Pte13g01334 119 FunFam 60S ribosomal protein L10, putative 74 114 - -
Pte13g01334 119 ProSitePatterns Ribosomal protein L10e signature. 7 28 IPR018255 GO:0003735|GO:0005840|GO:0006412
Pte13g01334 119 CDD Ribosomal_L16_L10e 10 65 IPR016180 GO:0003735|GO:0005840|GO:0006412
Pte13g01334 119 PANTHER 60S RIBOSOMAL PROTEIN L10 1 112 IPR001197 GO:0003735|GO:0005840|GO:0006412
Pte13g01334 119 Gene3D Ribosomal protein L10e/L16 1 77 IPR036920 GO:0003735|GO:0005840|GO:0006412
Pte13g01334 119 Gene3D - 78 113 - -
Pte13g01334 119 SUPERFAMILY Ribosomal protein L16p/L10e 1 72 IPR036920 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01334 Pte-Chr13 23084978 23086387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01334 1 117 Cytoplasmic Ribosomal Protein Gene Family AT1G26910 83.761 9.17e-72 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01334 K02866 - rcu:8283224 230.72