Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01326 ATGGCATATACTAGCCAATCCATGTCAGTTTCTCCTCAGAGAAAAATGGGAAGAGGGAAGATCGAGATCAAGAGGATTGAGAACACAACAAATCGTCAAGTTACTTTTTGTAAGCGCAGGAATGGCTTGCTCAAGAAAGCATATGAATTGTCTGTGCTTTGCGATGCTGAAGTTGCTCTAATAGTCTTCTCTACCAGAGGACGTCTTTATGAATATGCTAATAACAGTGTGAAAGCAACAATTGAGAGGTACAAAAAAGCAAGCACAGATTCGTCTGGAACTGGGTCAGTTTCTGAGGTGAATGCCCAGCAATACCAACAAGAATCTGGTAAACTGCGAGCACAAATTGGAAATCTCCAGAATAATATCAGGCAAATGCTGGGTGGAAATCTAAGCTCCATGAATGTGAAGGATCTGAAAAGCATGGAGAGTAAACTAGAAAAAAGCATTGGCAAAATTCGTACTAAAAAGAATGAGCTGCTGTTTGCAGAGATTGAGTTCATGCAGAAAAGGGAAATAGAGTTGCACGACAATAACCAGCTTCTCCGAGCAAAGATTGCTGACAATGAAAGGACCAATCAGAACATCAATGTGATGCCTGGAGGGAGTAACTATGAACCTGTGCATTCTCAAACATTTGACAATCGAAACTACTTCCAATTAATGTGA 669 0.4051 MAYTSQSMSVSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKATIERYKKASTDSSGTGSVSEVNAQQYQQESGKLRAQIGNLQNNIRQMLGGNLSSMNVKDLKSMESKLEKSIGKIRTKKNELLFAEIEFMQKREIELHDNNQLLRAKIADNERTNQNINVMPGGSNYEPVHSQTFDNRNYFQLM* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01326 222 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Pte13g01326 222 SUPERFAMILY SRF-like 17 89 IPR036879 GO:0003677|GO:0046983
Pte13g01326 222 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Pte13g01326 222 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Pte13g01326 222 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Pte13g01326 222 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Pte13g01326 222 Coils Coil 139 159 - -
Pte13g01326 222 FunFam agamous-like MADS-box protein AGL11 28 111 - -
Pte13g01326 222 ProSiteProfiles K-box domain profile. 102 192 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte13g01326 222 CDD MADS_MEF2_like 17 91 IPR033896 GO:0000977|GO:0045944
Pte13g01326 222 Coils Coil 102 122 - -
Pte13g01326 222 Pfam K-box region 99 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte13g01326 222 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Pte13g01326 222 Gene3D - 28 113 IPR036879 GO:0003677|GO:0046983
Pte13g01326 222 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Pte13g01326 222 PANTHER SERUM RESPONSE FACTOR HOMOLOG 16 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01326 Pte-Chr13 22917695 22925757 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01326 14 221 MADS-box Gene Family AT3G58780 63.721 3.36e-91 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte13g01326 K-box 2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01326 K09264 - qsa:O6P43_012856 351.673