Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01325 ATGGGTGCAGATAAAAACAATATCGAAATGGAGGAAGGAACTTTAGAGATCGGGATGGAGTACAGAACTGTATCTGGAGTTGCGGGACCATTGGTTATCCTTGATAAAGTCAAGGGACCTAAATACCAAGAAATCGTAAATATCCGCCTGGGAGATGGAACCACCCGCCGTGGTCAGGTCCTGGAAGTTGATGGAGAAAAGGCTGTTGTTCAGGTGTTTGAAGGAACGTCTGGAATCGACAACAAATTCACAACTGTACAATTTACTGGAGAGGTTCTGAAGACTCCTGTGTCATTGGACATGCTTGGCCGCATTTTCAATGGTTCTGGAAAGCCAATTGACAATGGTCCTCCTATTTTGCCAGAGGCTTATTTGGATATTTCAGGGAGTTCTATCAATCCTAGTGAGAGAACCTATCCTGAGGAGATGATACAGACAGGAATTTCAACCATTGATGTTATGAATTCTATTGCTAGAGGACAAAAGATCCCTCTTTTCTCTGCTGCTGGTCTTCCCCACAATGAAATTGCGGCACAAATATGTCGTCAAGCGGGTTTGGTGAAGAGATTGGAGAAGACTGAAAATCTTCTTGGGGAGGAGGATAACTTTGCTATTGTCTTTGCTGCTATGGGTGTAAATATGGAGACTGCTCAATTTTTCAAGCGCGATTTTGAGGAGAATGGTTCTATGGAAAGAGTGACCCTGTTTCTTAATCTGGCAAATGACCCCACAATTGAACGTATTATCACACCTCGTATTGCTCTTACCACTGCTGAATATTTGGCATATGAATGTGGGAAGCATGTTCTTGTGATCCTCACCGACATGAGTTCCTATGCTGATGCTCTTCGTGAGGTATCTGCTGCCCGAGAAGAAGTGCCAGGAAGACGTGGATATCCTGGGTACATGTATACTGACCTGGCAACAATCTATGAGCGTGCTGGAAGAATTGAAGGGAGGAAAGGGTCCATCACACAGATTCCTATTCTAACTATGCCAAATGATGACATTACACATCCTACCCCTGATCTCACTGGGTATATCACTGAGGGGCAGATATACATTGACCGTCAGCTACACAACAGACAGATATATCCTCCAATCAATGTCCTTCCATCACTATCTCGTCTAATGAAGAGTGCTATTGGTGAGGGAATGACTCGCAGGGATCATTCTGATGTGTCCAATCAGCTTTATGCAAACTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTCGTCGGAGAAGAAGCCCTTTCATCGGAGGATCTGTTGTATCTTGAATTCTTGGACAAGTTTGAGAGGAAGTTTGTCACACAAGGTGCTTATGATACCCGTAACATTTTTCAGTCTCTTGACCTAGCGTGGACTTTGCTGCGCATTTTCCCGCGTGAGCTTCTCCACCGTATACCTGCAAAGACTCTTGATCAATTTTATAGCAGAGACGCAGCCAATTGA 1461 0.4422 MGADKNNIEMEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTENLLGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVTQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRDAAN* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01325 486 CDD ATP-synt_V_A-type_beta_N 20 91 - -
Pte13g01325 486 Gene3D - 29 486 - -
Pte13g01325 486 CDD ATP-synt_V_A-type_beta_C 385 479 - -
Pte13g01325 486 PIRSF V-ATPsynth_beta/V-ATPase_B 11 486 IPR022879 -
Pte13g01325 486 ProSitePatterns ATP synthase alpha and beta subunits signature. 366 375 IPR020003 GO:0005524
Pte13g01325 486 Pfam ATP synthase alpha/beta family, beta-barrel domain 24 90 IPR004100 GO:0046034|GO:1902600
Pte13g01325 486 FunFam V-type proton ATPase subunit B, brain 29 486 - -
Pte13g01325 486 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 4 484 IPR022879 -
Pte13g01325 486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 381 IPR027417 -
Pte13g01325 486 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 147 375 IPR000194 GO:0005524
Pte13g01325 486 Hamap V-type ATP synthase beta chain [atpB]. 18 484 IPR022879 -
Pte13g01325 486 NCBIfam V-type ATPase subunit B 20 485 IPR005723 GO:0033180|GO:0046961|GO:1902600
Pte13g01325 486 CDD V_A-ATPase_B 92 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01325 Pte-Chr13 22902218 22908876 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01325 1 487 Primary Pumps ATPases(2) AT4G38510 96.933 0.0 966
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01325 K02147 - han:110941202 940.643