Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01314 ATGAAGCTTTCAACCTCAGGGCTGGGTCAGCAGGGACATGAAGGAGGGGAGAAGAAATGTCTGAATTCAGAGCTATGGCATGCATGTGCAGGACCCCTCGTGTCCCTACCCAATTCCGGCACTCGAGTGGTTTACTTTCCTCAGGGTCATAGTGAGCAGGTTGCTGCTACGACTAACAGGGAAATTGATGGACAAATCCCCAATTACCCAAGCTTGCCACCACAGTTAATTTGCCAGCTCCATAATGTCACTATGAATGCAGATGTTGAGACAGATGAAGTATACGCACAAATGACACTACAGCCACTCACACCGCAAGAGCAAAAGGAGACATTTCTTCCTATTGAATTTGGGATTCCAAGTAAGCAGCCGACAAATTATTTCTGCAAGACATTAACTGCAAGTGATACCAGCACTCATGGAGGGTTCTCTGTTCCTCGCCGTGCCGCTGAGAAAGTTTTCCCTCCCTTGGATTTTTCACACCAACCACCTTGTCAAGAACTCATTGCAAGGGATCTCCATGATGTTGAGTGGAAATTTAGACACATCTTCCGGGGACAGCCAAAACGGCACCTTCTTACAACTGGATGGAGTGTGTTTGTCAGTGCAAAGAGACTTGTTGCTGGAGATGCTGTGCTTTTTATATGGAATGAAAAGAATCAGCTGCTACTTGGAATTCGCCGTGCCAATCGACCACAAACTGTCATGCCATCGTCAGTTCTTTCAAGTGATAGCATGCACATTGGACTCCTTGCTGCTGCTGCTCATGCTGCAGCAACAAATAGCTGCTTTACGGTTTTTTATAATCCAAGGGCTAGTCCATCAGAATTTGTCATACCTCTTTCAAAATATGTGAAAGCTGCTTATCATACACGCGTGTCTGTTGGTATGCGATTCAGGATGCTGTTTGAGACTGAAGAATCCAGTGTGCGCAGGTATATGGGTACAATAACAGGCATCAGCGATTTGGATCCCGTCCGATGGCCGAGTTCTCATTGGCGGTCTGTCAAGGTTGGTTGGGATGAATCAACAGCAGGAGAAAGGCAGCCAAGGGTATCATTATGGGAAATTGAGCCTTTGACAACATTTCCAATGTATCCATCATTATTTCATCTTAGACTGAAACGACCATGGCATCCAGGGGCGTCTTCTATGAATGATGGAAGAGATGAAGCAACCAATGGCTTAATGTGGTTAAGAGGCCCTACTGGAGATCCGAGCCTTAACTCCCTTAACTTTCAAGGTGCTGGTATGTTGCCTTGGATGCAGCAGAGACTGGATCCAGCTTTGTTAGGAAATGACCACAACCAGCAGTACCAAGCCATGCTAGCAGCTGGTATGCAGAACATGGGTACTGGCGAAATTTTAAGGCAGCAGGTCATGCAGTTTCAGCAGCCTTTTCAGTATCTTCAGCAATCTGGAAGCCCCAACTCTCTATTGCAGCTTCAGCAGCCGCAAGCTCTTCAGCAATCAATACCCTCAAATATCCTGCAGGCACAAACACAACTTGCGTCTGGGAGTTTGTCCCAGCATGTTCCACAGAAACAATTTAACAATCAGGGACAGAATGCACCACAACAGCACCAACAAGATACGCTTCTAATTCACAATGATCAGCTCAACCAGAGGCAACATGTGACCTCTCCTTCATCATATTCAAAACCTGATTTCATGGATTTAAGCACCAAGTTCTCAGTATCTGTTAATCCTGGTCAAAATATGCTTAGTCCTCTTTGCCATGAGGGGAGTAGCAATGTTCAGACCTTAACCAGAAGTGCTCAGAATATTCCATCTGAACAGCTGCACCAACATCAGTGGGTTTCAAAATATGCTTCTATGGAGCTGAATGCTTTTGGAAACTCGGCATCACGCCCAGAATTTACTGGGAGAGATTCTGCTGTGCAACATGTTAACTCTGACAACCATAATCCTACACTTTTTGGTGTGAATATCGATTCATCTGGTCTGTTACTTCCAACAACTGTGCCTAGATCTTCTGTTGTTGATGATTCATCTACAATGCCAATTGGGGGTTCAGAATTTCAAAGTTCTTTGTATGGTTGTGTGCAAGATTCATCTGGGTTGTTGCAGAATGCTTCTCAAGTAGAGCCAACGAACTCAGCCCCAACATTTGTCAAGGTTTACAAATCTGGATCTGTTGGGCGCTCGCTAGACATTTCTCGCTTCAGCAGCTATAATGAGTTGCGCGAGGAGTTAGCTCAGATGTTTGGCATTGAGGGTAAGTTAGAAGACTCTCGTAGATCAGGCTGGCAGCTTGTATTTGTTGACAGGGAAAACGATGTGCTTCTCCTTGGAGATGACCCGTGGGAATCCTTTGTCAACAACGTTTGGTATATCAAAATTCTTTCTCCCGAGGATGTCCAGAAAATGGGAGAACAAGCAGTTGAAGCCTTCTGCCCTACTGCAGTAGGACAAAGGTTGAATAGCACTGGTGGTGAATCTCATGACTTTTCTGGGTTACCATCTATCGGTTCACTTGAATATTGA 2508 0.4526 MKLSTSGLGQQGHEGGEKKCLNSELWHACAGPLVSLPNSGTRVVYFPQGHSEQVAATTNREIDGQIPNYPSLPPQLICQLHNVTMNADVETDEVYAQMTLQPLTPQEQKETFLPIEFGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSHQPPCQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDAVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYVKAAYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPSSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFHLRLKRPWHPGASSMNDGRDEATNGLMWLRGPTGDPSLNSLNFQGAGMLPWMQQRLDPALLGNDHNQQYQAMLAAGMQNMGTGEILRQQVMQFQQPFQYLQQSGSPNSLLQLQQPQALQQSIPSNILQAQTQLASGSLSQHVPQKQFNNQGQNAPQQHQQDTLLIHNDQLNQRQHVTSPSSYSKPDFMDLSTKFSVSVNPGQNMLSPLCHEGSSNVQTLTRSAQNIPSEQLHQHQWVSKYASMELNAFGNSASRPEFTGRDSAVQHVNSDNHNPTLFGVNIDSSGLLLPTTVPRSSVVDDSSTMPIGGSEFQSSLYGCVQDSSGLLQNASQVEPTNSAPTFVKVYKSGSVGRSLDISRFSSYNELREELAQMFGIEGKLEDSRRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDVQKMGEQAVEAFCPTAVGQRLNSTGGESHDFSGLPSIGSLEY* 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01314 835 FunFam Auxin response factor 704 798 - -
Pte13g01314 835 Pfam AUX/IAA family 704 794 IPR033389 -
Pte13g01314 835 FunFam Auxin response factor 292 364 - -
Pte13g01314 835 SMART B3_2 128 230 IPR003340 GO:0003677
Pte13g01314 835 Gene3D - 126 229 IPR015300 -
Pte13g01314 835 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Pte13g01314 835 Gene3D - 292 364 - -
Pte13g01314 835 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Pte13g01314 835 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pte13g01314 835 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 798 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pte13g01314 835 MobiDBLite consensus disorder prediction 507 528 - -
Pte13g01314 835 CDD B3_DNA 127 228 IPR003340 GO:0003677
Pte13g01314 835 Gene3D - 705 798 - -
Pte13g01314 835 FunFam Auxin response factor 126 230 - -
Pte13g01314 835 SUPERFAMILY CAD & PB1 domains 708 783 - -
Pte13g01314 835 ProSiteProfiles PB1 domain profile. 709 793 IPR000270 GO:0005515
Pte13g01314 835 SUPERFAMILY DNA-binding pseudobarrel domain 112 257 IPR015300 -
Pte13g01314 835 MobiDBLite consensus disorder prediction 816 835 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01314 Pte-Chr13 22580844 22589147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01314 98 801 B3 DNA Binding Superfamily AT5G37020 65.556 0.0 860
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pte13g01314 AUX_IAA 3.7e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01314 - - gmx:100784804 1327.38