Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01293 ATGAAACCACGGTTTGATCTTGAAGTTGAGGCTTCTTCTGCAGAAAACGAAATCGAAGTTAGCAGTCTAGTTGTTTCTAACATATCTGCAGTACCCTCTGGTGAAACCCTTACCAATTCTTCCAGCCATGGGGCTCAACCGAATTCAGAGCCAGTGTCACTTGACTTAAATCTCAACTATGATGGTAATGAATTAGGGGTTTCGATTGGACTCTCACTGTCAAGTACCAGTGAGAGCAGCAATGAACCTGTAGCTCGAACCACTGCTTCAACTATCCCTCGAGTTTTCTCCTGCAATTACTGTCAGCGCAAATTTTACAGCTCACAGGCCCTTGGTGGTCACCAGAATGCACACAAGCGAGAAAGAACGTTGGCGAAACGAGCTATGCGAATGGGGTTCTTTTCTGATAGGTATACTAGTCTATCATCACTGCCTCTGCATGGTTCGTTCAGGTCCTTGGGAATAAAAGCACACTCTTCGCAGCACCAAGGTCTTTCTGCAACAGTGAGGCCTCCTGAGATTAAAAGCAATGCTAGATTTGAACAGAGTTATCCGGGCGTAACGATGTTCTTGGATGAAGATGAAGGCGAGTTTATGTGGCCAGGTAGTTTCCGTCAGGTTGCAGAGGTAGGTGATACTCATCCTCATCCAATTTTTGATCTGACTAGAAGAATCGATACAAGTTTCTCCGATGTGACGCCTCCCACAGAGATAGATAACTCAACACCAGATCTTACTTTGAAATTGTAA 750 0.448 MKPRFDLEVEASSAENEIEVSSLVVSNISAVPSGETLTNSSSHGAQPNSEPVSLDLNLNYDGNELGVSIGLSLSSTSESSNEPVARTTASTIPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRAMRMGFFSDRYTSLSSLPLHGSFRSLGIKAHSSQHQGLSATVRPPEIKSNARFEQSYPGVTMFLDEDEGEFMWPGSFRQVAEVGDTHPHPIFDLTRRIDTSFSDVTPPTEIDNSTPDLTLKL* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01293 249 Gene3D Classic Zinc Finger 75 140 - -
Pte13g01293 249 FunFam Zinc finger protein 2 73 142 - -
Pte13g01293 249 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Pte13g01293 249 MobiDBLite consensus disorder prediction 230 249 - -
Pte13g01293 249 SUPERFAMILY beta-beta-alpha zinc fingers 94 123 IPR036236 -
Pte13g01293 249 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 123 IPR013087 -
Pte13g01293 249 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 9 166 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01293 Pte-Chr13 21980116 21980865 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01293 78 250 C2H2 Transcription Factor Family AT1G66140 50.754 3.13e-49 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte13g01293 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01293 - - gmx:100794851 313.153