Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01288 ATGGTTTGCATTATTTGTGGGATGTCTGAAAGCAAAGATGGTAGGTGGTTTTCGGATCATACCCATATAAAAATGTCTTGGATAGGATATCAGTTACAACGAAAAGATGGTTATGTGAGCTACCCACCGCCTCTGCCTCCTACATCTTCATATGCAAACGCTGAATCTTCTCCATCGAATAGGTATCCTGAAATTTCTACCTCCGATGCACTTCAGAGGCAGCTGCAACAGTTATTTTACACCCTTGAATCTGGTTTGGATCAAGCTTTAATTGATGCGCTTCCTGTTTTTCAGTATAAAGAGATAGTTGGCGCTCAAGAGCCATTTGATTGTGCTGTTTGTCTGTGTGAGTTTACTGAGAAGGACAAGCTGAGATTGCTTCCCACGTGCAGCCATGCTTTTCACATCAATTGTATAGACACTTGGCTACTATCAAACTCAACATGTCCTCTTTGTAGAGACTCCATCTTCAGACCTGAGTTTTCTATGGAGAACCCGATTTTCGAATTTCATGATTTTAGAGAGGAAGATGAGTGTCCTGTAAATGGAGAGAATGGATTTCCTTCCATACAAAAAACTGTTGAAATGGGAGAGCTTGTTGTTCGAAAAGGTGTTTTACCAGTTAGACTCGGTAAGTTTCGAAAATTGAATGAGGAAAAGGAGGATGTTGAAGGAGAGACTAGCAGCAGTAAGTTAGATGCAAGAAGGTGCTTCTCAATGGGGTCTTACCAATATGTTTTAGGGAATTTAGACCTAAGAATCACTTTGAACCGTGATAGGCAGGGTTGTGATAAGAAGCCTACAGATGGGACAGAAAAAACCGAGAATGAAAGTGATGGAGAAGCCAAGAAGATTGGTAGTGTAACTAAAGGCGAGAGCTTTTCTGTGTCAAAAATATGGTTGTGGTCTAAGAAGGGCAAATTTTCCAGTTCTTCAGATGAGCATATGGGTCTGCCGTCTTCATTCAACACAGAGCTGCCTTGGTTAAGGAAAACACAAGGAACATGA 1008 0.4117 MVCIICGMSESKDGRWFSDHTHIKMSWIGYQLQRKDGYVSYPPPLPPTSSYANAESSPSNRYPEISTSDALQRQLQQLFYTLESGLDQALIDALPVFQYKEIVGAQEPFDCAVCLCEFTEKDKLRLLPTCSHAFHINCIDTWLLSNSTCPLCRDSIFRPEFSMENPIFEFHDFREEDECPVNGENGFPSIQKTVEMGELVVRKGVLPVRLGKFRKLNEEKEDVEGETSSSKLDARRCFSMGSYQYVLGNLDLRITLNRDRQGCDKKPTDGTEKTENESDGEAKKIGSVTKGESFSVSKIWLWSKKGKFSSSSDEHMGLPSSFNTELPWLRKTQGT* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01288 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 159 IPR013083 -
Pte13g01288 335 MobiDBLite consensus disorder prediction 308 335 - -
Pte13g01288 335 CDD RING-H2_EL5-like 110 153 - -
Pte13g01288 335 SMART ring_2 111 152 IPR001841 -
Pte13g01288 335 MobiDBLite consensus disorder prediction 260 286 - -
Pte13g01288 335 Pfam Ring finger domain 110 153 IPR001841 -
Pte13g01288 335 MobiDBLite consensus disorder prediction 313 335 - -
Pte13g01288 335 SUPERFAMILY RING/U-box 90 161 - -
Pte13g01288 335 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Pte13g01288 335 FunFam RING-H2 finger protein ATL46 73 158 - -
Pte13g01288 335 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 57 300 - -
Pte13g01288 335 MobiDBLite consensus disorder prediction 260 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01288 Pte-Chr13 21860309 21862063 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01288 70 307 C3H Transcription Factor Family AT2G18650 41.667 2.35e-54 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01288 - - tcc:18600728 452.981