Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01277 ATGGCACTTGCCAAGGACCCATTGCCGCATGGTTCATGCATTAGTAGCAAACTCCAGGCTTCTGCATTCAGTGAAGAGGAAGACAGTTCTGAAAGCAGCAATGGCGTTAGCAAAACGTCGGCCAGCTCCATGACCCTTTATTCTCGTCTCACAGCTCCAAGTAGTGTTGATGGTAAAGGATATATATCCAAGGGTTCCAATTTTCAGCCTGACGAAACTGAATCTTTGTTTAATTTTAAAGCAGGATGCTATGCGTATGACAGTGTCTTGCATAACAGTGATTCATTGTATAGCTTTCAGCAAAGTTCACTTATCGCTAACAGCAACTACATGAAGATTAACAGTCAGAAAGATAATCTCTGCGTCTGGGGGAATGGATTGAACTCTGATTACCAATGGACTCAGGTTAGTCCCAAGTATGCACGCTCGCAGCAGGATTTCAGTTGCTTTCAAACAACAAGTAGCTACTGCTCTATTGGCTACAAGGCTAAAGAAAATCAACCTGATCAATGGTTATACTCAGAATCAACTGTAGTTGCTGATACACCACATGAAGTAGAAGCTCATGAACCAACCCTTCACAAGCGTCGTTATATGGAAGAGAGCATGCAGGCTCAGAAGAAGCAGTGCAGCAGTCATCAAAGTAAGAAGCAAAAACCCAAGTCAACTCCATCCAAGGATCCTCAAAGTATTGCAGCCAAGAACAGAAGAGAGCGGATTAGCGAGCGGCTTAAGATACTCCAAGAATTGGTACCTAATGGTTCAAAGGTTGATTTGGTCACAATGCTAGAGAAAGCCGTTAGTTATGTTAAGTTTCTTCAGTTGCAAGTGAAGGTATTAGCTACTGATGAATTCTGGCCAGCTCAAGGAGGGAAAGCCCCTGACATTTCTCAAGTGAAAGAAGCCATTGATGTCATTCTCGCATCTCATAATAAAGACAGAGACGTAACCTCAAAGTGA 960 0.4292 MALAKDPLPHGSCISSKLQASAFSEEEDSSESSNGVSKTSASSMTLYSRLTAPSSVDGKGYISKGSNFQPDETESLFNFKAGCYAYDSVLHNSDSLYSFQQSSLIANSNYMKINSQKDNLCVWGNGLNSDYQWTQVSPKYARSQQDFSCFQTTSSYCSIGYKAKENQPDQWLYSESTVVADTPHEVEAHEPTLHKRRYMEESMQAQKKQCSSHQSKKQKPKSTPSKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAVSYVKFLQLQVKVLATDEFWPAQGGKAPDISQVKEAIDVILASHNKDRDVTSK* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01277 319 Gene3D - 216 281 IPR036638 GO:0046983
Pte13g01277 319 MobiDBLite consensus disorder prediction 200 235 - -
Pte13g01277 319 SMART finulus 230 279 IPR011598 GO:0046983
Pte13g01277 319 CDD bHLH_AtIND_like 225 287 - -
Pte13g01277 319 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 224 273 IPR011598 GO:0046983
Pte13g01277 319 Pfam Helix-loop-helix DNA-binding domain 231 274 IPR011598 GO:0046983
Pte13g01277 319 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 223 284 IPR036638 GO:0046983
Pte13g01277 319 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 55 307 - -
Pte13g01277 319 MobiDBLite consensus disorder prediction 24 43 - -
Pte13g01277 319 FunFam Transcription factor bHLH83 222 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01277 Pte-Chr13 21593073 21594429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01277 84 317 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 49.398 4.53e-62 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte13g01277 HLH 8.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01277 - - qsa:O6P43_020600 305.449