Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01252 ATGAAGCCATTTTGGGGGTATTGTCATGGTGGTGGTGACTTTGGCTCGTTTTTGTCTACGGCATCTTGCAATTACGAGAGCACTGAGGATGAGGAAGACATGGCAAAATATTTGATTCTCTTGGCTCACGAGATTTGCCAAAGTAGGTTAAAGATGTGTAAAACATGTAACCGTTCTTTCCCTTCATTTCAAGCACTAGGAGGACATAGAGCGAGTCACAAAAAACCCAAGGTCACAACGGAAGAGAACAAGTCATCATCATCGCAATCAGTACCGGCCGAAACGCCTCCGCTGCAGTCTACTGATGATGGTGAGTTGGAATTCGAAGGTGAGGAACCGAGCCATGTCAAAAGTACTATGACCTTTGCTCCAGTTCAGGTGTCGTCATCTACAATCGGAGGAATCGATCAGAACAATGCCAAGATTCACGAGTGTTCAATCTGTGGATCAGAGTTTTCATCTGGGCAAGCCTTGAGTGGACACATGAGGCGTCATAGGGCTGCACCGAGCACGGGTCAAATGGTTAGCTTGAACATCAGCAGTGACAACAGAGTTTGA 558 0.4642 MKPFWGYCHGGGDFGSFLSTASCNYESTEDEEDMAKYLILLAHEICQSRLKMCKTCNRSFPSFQALGGHRASHKKPKVTTEENKSSSSQSVPAETPPLQSTDDGELEFEGEEPSHVKSTMTFAPVQVSSSTIGGIDQNNAKIHECSICGSEFSSGQALSGHMRRHRAAPSTGQMVSLNISSDNRV* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01252 185 MobiDBLite consensus disorder prediction 66 116 - -
Pte13g01252 185 ProSitePatterns Zinc finger C2H2 type domain signature. 53 73 IPR013087 -
Pte13g01252 185 SUPERFAMILY beta-beta-alpha zinc fingers 52 165 IPR036236 -
Pte13g01252 185 PANTHER ZINC FINGER PROTEIN ZAT5 22 170 - -
Pte13g01252 185 Gene3D Classic Zinc Finger 51 165 - -
Pte13g01252 185 ProSiteProfiles Zinc finger C2H2 type domain profile. 143 170 IPR013087 -
Pte13g01252 185 SMART c2h2final6 51 73 IPR013087 -
Pte13g01252 185 SMART c2h2final6 143 165 IPR013087 -
Pte13g01252 185 MobiDBLite consensus disorder prediction 82 97 - -
Pte13g01252 185 Pfam C2H2-type zinc finger 53 76 - -
Pte13g01252 185 Pfam C2H2-type zinc finger 143 167 - -
Pte13g01252 185 ProSitePatterns Zinc finger C2H2 type domain signature. 145 165 IPR013087 -
Pte13g01252 185 ProSiteProfiles Zinc finger C2H2 type domain profile. 51 78 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01252 Pte-Chr13 21158053 21158911 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01252 28 171 C2H2 Transcription Factor Family AT2G28200 43.636 3.16e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte13g01252 zf-C2H2_6 2.2e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01252 - - qsa:O6P43_000387 153.295