Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01244 ATGGGGAGATCACCATGCTGTGATAAGGTGGGCTTAAAGAAAGGACCATGGACACCGGAGGAGGATCAGAAACTCTTGGCGTATATTGAAGAGCAAGGACATGGAAGCTGGCGCGCCTTGCCGGCTAAAGCTGGTCTTCAGAGGTGTGGAAAGAGCTGCAGACTAAGGTGGACTAATTATCTTAGACCTGATATTAAGAGGGGAAAGTTCAGTTTGCAAGAAGAGCAAACCATCATTCAACTCCATGCACTCTTGGGGAACAGATGGTCAGCCATAGCCACTCACTTGCCTAAGAGAACAGATAATGAAATTAAGAACTATTGGAACACACATCTCAAGAAAAGACTAGCCAAAATGGGAATCGACCCAGTCACTCACAAACCTAAGAATGATGCTCTTCTCTCTGTTGATGGCCAGACCAAAAATGCAGCCAACCTTAGTCACATGGCTCAGTGGGAAAGTGCCAGGCTTGAAGCTGAAGCCAGACTAGTTAGGGAATCCAAGTTACGTTCACAATCATTGCAGAAACAGCTTGGAAACTCTGGCTTAATGGGTAATTCATCTTCTGCTTCTGCTTCAAGCGCAGCCCCAGCTAACTCACTTTTAAATAAATTAGCTACAACTACCCCCATACCATCTCACACTCTTGATGTTCTGAAAGCTTGGAATGGTGGGTGGCTAAAGTCCACCGAATTCAACGGGAATAATGCTACTGCAGACCTTGAGTCTCCTACTTCTACCCTAACATTCTCCGAGAATGCACCGCCAATTATGACAGGTGGACTTGTGGAGAGTACCAACAATACGATTGAATTTGTCGGAAGTACTTCAGGTTCATCTGATAATGCTGGATTTGTAAAGGAGGAAGGTGAACAAGATTGGAAGAGTTACGACAATTCAACTCACTTGCCTGAATACAAAGAGGGTTTAGAACACTCAATGTCATTTACGTCTGGTTTGCATGACATGACAATGTCCTTGGAAGGGACATGGACATCTGAGTCTTTGAGAAATAGTGGGGGAAATATTAATCTTGGAACTTTGATGGCAGACGAGGGGTTCACTAATCTTTTGCTTAATAATTCCGATGAACGAAATTTGTCAGATGGGGGCGCCGGAGAGTCTGATAATGTTGGCGGCAGTGGTAGTGACTACCATGAAGACAATAAAAATTACTGGAACAGCATTCTTAATTTAGTGAATTCTTCTCCATCAGATTCCCCAATGTTCTGA 1233 0.4396 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEQGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLAKMGIDPVTHKPKNDALLSVDGQTKNAANLSHMAQWESARLEAEARLVRESKLRSQSLQKQLGNSGLMGNSSSASASSAAPANSLLNKLATTTPIPSHTLDVLKAWNGGWLKSTEFNGNNATADLESPTSTLTFSENAPPIMTGGLVESTNNTIEFVGSTSGSSDNAGFVKEEGEQDWKSYDNSTHLPEYKEGLEHSMSFTSGLHDMTMSLEGTWTSESLRNSGGNINLGTLMADEGFTNLLLNNSDERNLSDGGAGESDNVGGSGSDYHEDNKNYWNSILNLVNSSPSDSPMF* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01244 410 MobiDBLite consensus disorder prediction 365 385 - -
Pte13g01244 410 CDD SANT 69 112 IPR001005 -
Pte13g01244 410 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pte13g01244 410 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pte13g01244 410 CDD SANT 16 61 IPR001005 -
Pte13g01244 410 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pte13g01244 410 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pte13g01244 410 FunFam Transcription factor RAX3 7 67 - -
Pte13g01244 410 FunFam MYB transcription factor 69 116 - -
Pte13g01244 410 Gene3D - 13 66 - -
Pte13g01244 410 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pte13g01244 410 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pte13g01244 410 SMART sant 66 114 IPR001005 -
Pte13g01244 410 SMART sant 13 63 IPR001005 -
Pte13g01244 410 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pte13g01244 410 Gene3D - 69 116 - -
Pte13g01244 410 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01244 Pte-Chr13 20063127 20065501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01244 343 411 MYB Transcription Factor Family AT3G01140 56.338 2.85e-12 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte13g01244 Myb_DNA-binding 4.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01244 K09422 - cave:132181307 609.757