Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01238 ATGGACAGCTACTTCCATTTCGACAACAGCGAAGCCAGTTTGTCTCCTGGCTTCCACCTTACTGATGAGGAGCTCATCACGTGCGAACCATGGGAGCTTCCAGATAAAGCTAAGATGGGTGAGAAAGAATGGTATTTCTTTAGCTTGCATGACAGGAAGTACCCAACTGGTTTACGAACTAACAAAGCTACTGAGGCTGGTTACTGGAAAGCTACCGGTAAAGACATAGATATTTACAGTTCCAAAAGCAGCTCTCTCGTTGGAATGAAGAACTCTGGTGTTCTACCGAGGTTAGCAGGAAAATTAGGGGAGTTAGCAGGTGAGGTGGAAGGCTGA 336 0.4613 MDSYFHFDNSEASLSPGFHLTDEELITCEPWELPDKAKMGEKEWYFFSLHDRKYPTGLRTNKATEAGYWKATGKDIDIYSSKSSSLVGMKNSGVLPRLAGKLGELAGEVEG* 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01238 111 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 22 94 - -
Pte13g01238 111 SUPERFAMILY NAC domain 14 91 IPR036093 GO:0003677|GO:0006355
Pte13g01238 111 ProSiteProfiles NAC domain profile. 1 111 IPR003441 GO:0003677|GO:0006355
Pte13g01238 111 Gene3D NAC domain 3 101 IPR036093 GO:0003677|GO:0006355
Pte13g01238 111 Pfam No apical meristem (NAM) protein 21 94 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01238 Pte-Chr13 19538210 19538701 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01238 4 104 NAC Transcription Factor Family AT5G53950 55.039 3.07e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte13g01238 NAM 3.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01238 - - vvi:100246914 146.747