Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01237 ATGTCGGGTGCTAAAGACCCGGTCATCAAACTCTTCGGTAAGACCATTCAGTTGCAGGAGATTCAGGCTCGATCTGAAGACTCCATGGGAGCTGTAACAAATTCTTCTTCTGGGGCTGCTGGTGTCGATGTCGATAATGATTCGAATCAGGCTTCCACCATCAACTCTTCATCTGATGACTGCAATACCAGCACAAATGGAGGGTACTCTGAGTTTGATAAGGATTTCCGAGGACAGACTACAGACTCCAAGATGGAAGATGGAAGCCCTACAATGTCTTCAGAAGAAATCATGGACCCTGATGTACGTTCATCCATAGAGAACTCCAATGCGCTCTCATATGAGGAAACTCCTGCATCTAAAAGTTCAAAGACTCGAGAAGAACAAAAGGATAAAAATGGTTCACAAGAGAAAAATCCAAAGAAGCCAGACAAGATACTTCCCTGTCCTCGCTGTAATAGCATGGAAACCAAGTTCTGTTACTACAATAATTACAATGTCAATCAACCTCGACATTTCTGTAAGAAGTGCCAAAGGTACTGGACAGCAGGTGGAACTATGAGAAACATGCCTATTGGTGCTGGTCGTAGAAAGAACAAGACATCTGCTTCTCATTATCATCAACTAACTGTCTCTGAAACTTTTCAGAATCCTCAAACTGATATACTGAATGGATTCCGACATCCTTCTTTGGAACCTGATGCCATGTTTCTCACTTTTGGTAATGATACACCACTTTGTAAACTGCGGACATCTGATTTGAATCATAGAGACAAATCAATGCAGAATAGCATAAGAAATGGATTTCACAAACCTAAAGAAATAAGAATTCCCGTTTCTTATAGCAATGGAGAACATGGCAGTGATCAATTGAGTAAACCTTATAAGGTAAAGGATGATGCAAATAACACCTTGTCACAAGTAGGACTGCATAGCTTCTTACCTCAGATTCCTTTTTTTACTGAGAAAAATTGGCCTTTCCCGTGGAATCTATCACAGTGGAGTCCACACATAACACCACCAACTTTATACCCGCCAGGATTTGCTGTGCCACTATATCCTGCCGCAGCATATTGGGGCTGGACTGTTTCAGGTACTTGGGATACCCCATCGTTGTCCCAGCAACAATCTCCAGAAGACGCTGACTCTTCATCACCAACCTTGGGCAAACATTCAAGGGAAGAGAACATGACCAAATCAAATAATTCTCAGGAATTGAATGAGCATGTAAGAGAAAAAATTAAAGGGACAAAACTTTGGTTGCCAAAAACATTGAGGCTTGATGACCCCAGAGATACTGCAAAAAGCTCTTTATGGACAACACTTGGTATTAAAAATGATATGGCTAGGGGCGTGCAGCTCTTCAAGAGATTTTCTGCGAAGGATGATGAAAAAATTCATTTAAGGGGATCATCAGCGGTTCTGCAAGCCAATCCAGCAGCACTGTCAAGGTCCCTCAACTTTCATGAAAGCGCTGTATGA 1482 0.4197 MSGAKDPVIKLFGKTIQLQEIQARSEDSMGAVTNSSSGAAGVDVDNDSNQASTINSSSDDCNTSTNGGYSEFDKDFRGQTTDSKMEDGSPTMSSEEIMDPDVRSSIENSNALSYEETPASKSSKTREEQKDKNGSQEKNPKKPDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKKCQRYWTAGGTMRNMPIGAGRRKNKTSASHYHQLTVSETFQNPQTDILNGFRHPSLEPDAMFLTFGNDTPLCKLRTSDLNHRDKSMQNSIRNGFHKPKEIRIPVSYSNGEHGSDQLSKPYKVKDDANNTLSQVGLHSFLPQIPFFTEKNWPFPWNLSQWSPHITPPTLYPPGFAVPLYPAAAYWGWTVSGTWDTPSLSQQQSPEDADSSSPTLGKHSREENMTKSNNSQELNEHVREKIKGTKLWLPKTLRLDDPRDTAKSSLWTTLGIKNDMARGVQLFKRFSAKDDEKIHLRGSSAVLQANPAALSRSLNFHESAV* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01237 493 MobiDBLite consensus disorder prediction 23 70 - -
Pte13g01237 493 MobiDBLite consensus disorder prediction 103 119 - -
Pte13g01237 493 MobiDBLite consensus disorder prediction 120 145 - -
Pte13g01237 493 MobiDBLite consensus disorder prediction 370 408 - -
Pte13g01237 493 ProSitePatterns Zinc finger Dof-type signature. 149 185 IPR003851 GO:0003677|GO:0006355
Pte13g01237 493 PANTHER CYCLIC DOF FACTOR 2 5 491 IPR045174 GO:0003700|GO:0006355
Pte13g01237 493 MobiDBLite consensus disorder prediction 23 148 - -
Pte13g01237 493 Pfam Dof domain, zinc finger 144 201 IPR003851 GO:0003677|GO:0006355
Pte13g01237 493 ProSiteProfiles Zinc finger Dof-type profile. 147 201 IPR003851 GO:0003677|GO:0006355
Pte13g01237 493 MobiDBLite consensus disorder prediction 370 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01237 Pte-Chr13 19083674 19086966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01237 6 492 C2C2-Dof Transcription Factor Family AT5G39660 39.804 2.63e-97 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pte13g01237 zf-Dof 2.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01237 - - jre:108985957 517.694