Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01224 ATGGCCTTTGTGAACAGAATTGGAAGTGTACTGAAGTATACTTTGAAGAATATCAGTGTAGAAACATGTGCCTCTAATCCCTCAATATATCAGGCAATCCGGTCGATCTCCACATCCAAAATATTTGTGGGAGGTATTTCTTATGGAACTGATGAGATGGGTCTGAGAGAAGCCTTTGCTCGATATGGAGAGATAGTTGATGCTAGGATCGTGACAGACCGTGATAGTGGTAGGTCTAGAGGTTTTGCCTTCATAACCTTTGCATCAAGTGAGGACGCATCTTCAGCAATTCAGGCCATGGATGGCCAGGATCTTCATGGTCGAAAGATAAGAGTAAATTATGGAACAGAAAAATCTGTTCCTGGATTTGGTCGTGGTGCTAGTGGTGGCTATGCTGGGGGTAAATTTACAAGCAATGTGAATTATGGAGCTGGAAGTGGCAATTATTGA 450 0.4267 MAFVNRIGSVLKYTLKNISVETCASNPSIYQAIRSISTSKIFVGGISYGTDEMGLREAFARYGEIVDARIVTDRDSGRSRGFAFITFASSEDASSAIQAMDGQDLHGRKIRVNYGTEKSVPGFGRGASGGYAGGKFTSNVNYGAGSGNY* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01224 149 SMART rrm1_1 40 113 IPR000504 GO:0003723
Pte13g01224 149 CDD RRM2_NsCP33_like 40 115 - -
Pte13g01224 149 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 35 136 - -
Pte13g01224 149 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 111 IPR000504 GO:0003723
Pte13g01224 149 Gene3D - 26 149 IPR012677 -
Pte13g01224 149 SUPERFAMILY RNA-binding domain, RBD 25 145 IPR035979 GO:0003676
Pte13g01224 149 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 117 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01224 Pte-Chr13 15388705 15391121 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01224 12 122 C2H2 Transcription Factor Family AT2G19380 31.034 2.62e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01224 K12741 - gmx:100807155 186.037