Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01216 ATGGAAGTGATAAAGAGATTTCCTAAGATTGATTCAGAAAGCAATGAAGGCATAATTCTAGAGAACGTTTCAGGGGAAGTCGAATTCAACCAAGTAAGATTCGCATATCCATCAAGACATGAAAGTCCTGTTTTAGTTGACTTCAGTCTCAAGGTACCTGCAGGCAAGACTGTGGCCTTGGTAGGTGGCAGTGGCTCAGGAAAATCAACTGTAATTTCACTTCTTCAAAGATTTTATGATCCAATTGGTGGTGAGATACTTCTTGATGGGGTTGCTATACATAAACTACCGGTCAAATGGTTGAGATCACAGATGGGTCTGGTCAGCCAGGAGCCTGCACTTTTTGCAACTTCAATTATGGAGAACATACTATTTGGCAAAGAGGATGCTACAATGGAAGAAGTAGTAGTGGCTTCCAAGGCTGCCAATGCTCATGGTTTCATTTCACAGTTGCCCCAAGGGTATAACACCCAGGTTGGCGAAAAGGGAGCGCAAATGTCAGGGGGACAGAAACAAAGAATAGCCATTGCAAGAGCACTCGTAAAAAGTCCAAAAATTCTTCTCTTAGATGAAGCAACCAGTGCATTGGACTCTGAATCAGAACGCAGTGTCCAAGAAGCAGTGGATAGAGTAGCTTCAGGTCGCACCACCATAATCATAGCCCACCGCTTATCCACTGTCCGAAATGCTGATATCATCGCAGTTGTACAACACGGTAAGGTTATGGAACTGGGTTCACATGAAGAGCTCACTAAAAAAGAATATGGTCTCTACACCTCACTTGTTCATCTTCAACGTTCAGACACAGAGAATAAACTTCAAGCAACCCACGAAGCCAAAGTCTCTGACTCCCCATTTCGTAGTTTGCATTATAGCATGAGTCATAGGGTCTCTAAAGGGAGCAGTAGGATCTCTAGGGCGAGTAGTAGATTTTCAGCTGAGTCGCCTGAAAATGTTGAGATTGCACATGTCGGCCAAGATAGTAGCATTGATGATGAGATCTTTCCTAAAACCTCTTTCAGAAGACTGCTGGCTATTAGCATCCCAGAGTGGAAGCACGCGACAATTGGATGTTTGAGTGCTATGCTGTTTGGTGTTGTGCAGCCATTGCACTCATTTGCCATGGGGACCATGAGTTCAGTGTATTTCTTGAAAGATCATCATGAAATTCAAGAGAAGACAAAGATTTATGCATTATGTTTTCTGGGGTTGTCTGTGTTTGCCTTCCTCATCAACGTTAGCCAGCATTATAATTTTGCTTACATGGGAGAGAATCTAACAAGAAGAGTCAGAGAGAGAATGCTGTCCATGATTCTTACTTTCGAAGTTGGGTGGTTTGATAAGCAAGAAAATTCCAGCGGTACAATTTGCTCTAGACTTGCTAAAGACGCCAATGTGGTAAGAACACTAGTGGGCGATAGAATGGCTCTACTTACTCAAATCTTGTCATCCATAACCTTGGCGTTCGCACTAGGCCTCGTGATTGCATGGAAGCTTGCCATAGTCATGATAGCAGTTCAACCACTAGTCATTGCGTGCTACTACACAAGGCTTGTTCTACTCAAGAGCATGAGCAAAAAGGCCACTGAATCACAATATGCAAGCAGCAAGCTTGCAGCTGAATCCATATCTAACCTTCGAACCATCACATCTTTTTGTTCCCAAGAACGAATACTGAAAATGCTTGAGAAGGCACAAGAGGGCCCATATCATGAAAACCTTAAGCAATCATGGTATGCTGGCATTGGACTAGCTTCTTCACAGGCTCTCATGACTTGCACATGGGCACTTAGCTTTTGGTATGGTGGGAAGCTAGTGTATCAGAATCAGATCTCTTCAAAATCAATGTTTCAGACTTATTTAATCTTAGTAAGTTCAGGGCGGTCTATTGCTGATGCAGGAAGTATGACAACTGACTTAGCAAAAGGGTCAAATGCTATTAGATCAGTCTTTCTTATATTGGACAGAAGTACAAAAATTGAACCGGATGACAAGAATGGCCGTAGGGTTAAAAAGGTAAAAGGTCATATAGAACTTCAGAATGTTTGCTTTGCTTACCCATCTAGACCTAATATCTTGATCTTAGAAGATTTCTCAGTAACAATCCAAGCAAGGAGATCAACTGCCTTGGTTGGTCATAGTGGATGTGGCAAATCCACAATTATTGGATTGATTGAGAGATTCTATGACACATCGAAAGGTATAGTGATGATAGATGGTCGAGATATCAGGTCATATCACCTTAGATCATTGAGGAAACACATAGCTCTAGTAAGCCAAGAGCCAACACTGTTCTCTGGTACCATGAGAGAAAATATTGCATATGGAGCATCAAGCAAGATTGATGAAATAGACATGATTGAGGCTGCTAAAGCTGCTAATGCTCATGATTTTATTTCAAGCTTGAATGATGGTTATGATACATGGTGCGGAGACAAAGGAGTACAACTTTCAGGAGGACAAAAACAACGCATTGCAATTGCTAGAGCAATATTGAAGAACCCAGCAGTGCTGTTATTGGATGAGGCTACCAGTGCTCTTGATAGTCATTCAGAGAAGGTTGTACAAGATGCTTTGGAACGAGTCATGGTTGGAAGGACTAGTGTGGTGGTAGCACACAGATTGAGTACTATAAGAAACTGTGATCTGATTGTTGTCTTGAATAAAGGGAAGGTGGTCGAGAAAGGGACACATTCATTTCTCATGTCAAAGAGATCATCAGGAGTGTACTATTCTTTGGCTAGTCTTCAAATGACTTCACAGAACTGA 2769 0.4196 MEVIKRFPKIDSESNEGIILENVSGEVEFNQVRFAYPSRHESPVLVDFSLKVPAGKTVALVGGSGSGKSTVISLLQRFYDPIGGEILLDGVAIHKLPVKWLRSQMGLVSQEPALFATSIMENILFGKEDATMEEVVVASKAANAHGFISQLPQGYNTQVGEKGAQMSGGQKQRIAIARALVKSPKILLLDEATSALDSESERSVQEAVDRVASGRTTIIIAHRLSTVRNADIIAVVQHGKVMELGSHEELTKKEYGLYTSLVHLQRSDTENKLQATHEAKVSDSPFRSLHYSMSHRVSKGSSRISRASSRFSAESPENVEIAHVGQDSSIDDEIFPKTSFRRLLAISIPEWKHATIGCLSAMLFGVVQPLHSFAMGTMSSVYFLKDHHEIQEKTKIYALCFLGLSVFAFLINVSQHYNFAYMGENLTRRVRERMLSMILTFEVGWFDKQENSSGTICSRLAKDANVVRTLVGDRMALLTQILSSITLAFALGLVIAWKLAIVMIAVQPLVIACYYTRLVLLKSMSKKATESQYASSKLAAESISNLRTITSFCSQERILKMLEKAQEGPYHENLKQSWYAGIGLASSQALMTCTWALSFWYGGKLVYQNQISSKSMFQTYLILVSSGRSIADAGSMTTDLAKGSNAIRSVFLILDRSTKIEPDDKNGRRVKKVKGHIELQNVCFAYPSRPNILILEDFSVTIQARRSTALVGHSGCGKSTIIGLIERFYDTSKGIVMIDGRDIRSYHLRSLRKHIALVSQEPTLFSGTMRENIAYGASSKIDEIDMIEAAKAANAHDFISSLNDGYDTWCGDKGVQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSHSEKVVQDALERVMVGRTSVVVAHRLSTIRNCDLIVVLNKGKVVEKGTHSFLMSKRSSGVYYSLASLQMTSQN* 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01216 922 Gene3D ABC transporter type 1, transmembrane domain 1 284 IPR036640 GO:0005524|GO:0016020
Pte13g01216 922 Pfam ABC transporter transmembrane region 355 624 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pte13g01216 922 Gene3D - 667 922 IPR027417 -
Pte13g01216 922 ProSitePatterns ABC transporters family signature. 166 180 IPR017871 GO:0005524|GO:0016887
Pte13g01216 922 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 677 914 IPR003439 GO:0005524
Pte13g01216 922 SUPERFAMILY ABC transporter transmembrane region 337 661 IPR036640 GO:0005524|GO:0016020
Pte13g01216 922 CDD ABC_MTABC3_MDL1_MDL2 27 265 - -
Pte13g01216 922 FunFam Putative ABC transporter B family member 8 322 665 - -
Pte13g01216 922 Gene3D ABC transporter type 1, transmembrane domain 324 665 IPR036640 GO:0005524|GO:0016020
Pte13g01216 922 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 356 642 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pte13g01216 922 CDD ABC_6TM_Pgp_ABCB1_D2_like 344 660 - -
Pte13g01216 922 PANTHER ABC TRANSPORTER B FAMILY 369 916 IPR039421 -
Pte13g01216 922 FunFam ABC transporter B family member 4 17 272 - -
Pte13g01216 922 SMART AAA_5 704 877 IPR003593 GO:0016887
Pte13g01216 922 SMART AAA_5 54 246 IPR003593 GO:0016887
Pte13g01216 922 Pfam ABC transporter 695 845 IPR003439 GO:0005524
Pte13g01216 922 CDD ABC_MTABC3_MDL1_MDL2 677 917 - -
Pte13g01216 922 ProSitePatterns ABC transporters family signature. 817 831 IPR017871 GO:0005524|GO:0016887
Pte13g01216 922 Gene3D - 17 266 IPR027417 -
Pte13g01216 922 Pfam ABC transporter 47 194 IPR003439 GO:0005524
Pte13g01216 922 FunFam ABC transporter B family member 4 667 922 - -
Pte13g01216 922 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 667 918 IPR027417 -
Pte13g01216 922 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 27 263 IPR003439 GO:0005524
Pte13g01216 922 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 265 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01216 Pte-Chr13 15050208 15054894 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01216 1 917 Calmodulin-binding Proteins AT2G36910 45.874 0.0 813
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01216 K05658 - zju:107415347 1285.4