Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01196 ATGACGGACGGCCAATTCTTCAATAGCATCTCCCTAGGGGGCCGTGGAGGCACCAGTCCAGGTCAAATGAGAATATATCCAGGAGGGATCGCATGGAAAAAACAAGGTGGTGGTAAAGCTGTTGAGATTGATAAGGCAGACATGTTAGAATTGGCATGGATGAAGGTTCCAAGAACAAATCAGCTTAGTGTTAGGTGCAAAGATGGCTTGTATTTCAAGTTTGTTGGATTCCGTGATCAGGATGTAGCAACTTTGACAACCTATTTCCAAACTACCTTCAGTATAACACCACTGGAGAAGCAGCTTTCTGTCAGTGGTCGTAACTGGGGAGAAATTGAGCAAAAAGAGAATTTGCTGGCATTTATGGTTGGCTCAAAGCAAGCTTTTGAAGTATCTCTCTCAGATGTCCATCAAGCACAAAATCAAGGGAAAAATGATGTGATCTTGGAGTTTCATGTGGATGATACAATGGGAGCTAATGAAAAAGATTCATTAATGGAGATAAGCTTCCACATACCCAACTCCAACACCCAATTTGTAGGTGATGATAACCGGGCTCCTTCTCAGGTTTTCCATGATAAAATAATGCCATGGGTAGATAACGGCAATGGTGATGATGCTGTAGTTACTTTTGATGGAATTGCAATTCTTACACCAAGGGGACGTTACAATGTTGAGCTTCATCTCTCATTCTTACGGCTTCAAGGCCAGGCTAATGACTTCAAAATTCAGTATAGCAGTGTTGTTCGCCTGTTTCTACTTCCTAAGTCTAACCAGCCACATACTTTTGTGGTTATATCTCTTGATCCACCCATTCGTAAAGGGCAGACTTTGTATCCACATATAGTGTTGCAGTTTGAGACTGACTATGTTGTCGAAAGTGATTTGTCTATCGGTGAAGATCTTCTGAACACCAAGTACAAGGACAAATTGGAAACGTCTTATAAGGGGCTTATTCATGAAGTGTTTACCACAATATTACGGGGTCTTTCCGGTGCCAAAGTTACCAAACCAGGAAAATTCCGTAGTGCTCATGACGGTTATGCTGTGAAATCCTCTTTGAAGGCTGAGGATGGAATTCTGTACCCACTCGAGAAGAGCTTCTTTTTTCTACCCAAGCCTCCTACGCTTATTCTACATGAGGAGATTGACTATGTGGAATTTGAGAGGCATACTGCTGGTGGATCAAATATGCATTACTTTGATCTACTTATAAGATTGAAGACCGAGCAAGAGCATCTTTTCCGCAATATCCAGAGGAATGAATATCACAATCTATTTGACTTCATCAGTAGTAAAGGCCTAAAAATAATGAATTTGGGAGGCGCAAAGACCACAGATGGTGTAGCTGCTGTTCTTCAGGATGAAGTCGATGATGCTGTTGATCCACATCTTGAACGTATTAAGAATGAGGCTGGTGGAGATGAAAGTGATGAAGAGGATGAAGATTTTGTGGCAGACAAAGATGATGGAGGTTCTCCAACTGATGATTCTGGTGAGGATGACACTGATGTTAGCAACAGTGATGAGGAGAAAGAGAAGTCTGTTAAAAAGGAGACGAAGAAAGAGCCATCGTCAAAGGCTTCTACTTCTAAAAAGAAATCTAAAGATGTTAATGAAGATGGGAAAAAGAAACGGCCAAAGAAGAAGAAAGATCCTAATGCGCCAAAAAGAGCTATGTCTGGCTTCATGTTTTTTTCACAGCTCGAAAGAGAGAGCGTCAAGAAAAGTAATCCTGGACTTTCATTCACTGATCTTGGCAGAGTACTGGGGGAAAAATGGAAAAAGATGACAGCTGAGGAGAAGGAACCCTATGAAGCGAAAGCTCGTGCTGATAAAAAGCGTTACAAAGATCAGCTTAGTGGCTACAAAAATCCCCAACCAATGGACGTCGATTCAGGGAATCAATCGGACAGTGACTAG 1923 0.4176 MTDGQFFNSISLGGRGGTSPGQMRIYPGGIAWKKQGGGKAVEIDKADMLELAWMKVPRTNQLSVRCKDGLYFKFVGFRDQDVATLTTYFQTTFSITPLEKQLSVSGRNWGEIEQKENLLAFMVGSKQAFEVSLSDVHQAQNQGKNDVILEFHVDDTMGANEKDSLMEISFHIPNSNTQFVGDDNRAPSQVFHDKIMPWVDNGNGDDAVVTFDGIAILTPRGRYNVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVISLDPPIRKGQTLYPHIVLQFETDYVVESDLSIGEDLLNTKYKDKLETSYKGLIHEVFTTILRGLSGAKVTKPGKFRSAHDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEIDYVEFERHTAGGSNMHYFDLLIRLKTEQEHLFRNIQRNEYHNLFDFISSKGLKIMNLGGAKTTDGVAAVLQDEVDDAVDPHLERIKNEAGGDESDEEDEDFVADKDDGGSPTDDSGEDDTDVSNSDEEKEKSVKKETKKEPSSKASTSKKKSKDVNEDGKKKRPKKKKDPNAPKRAMSGFMFFSQLERESVKKSNPGLSFTDLGRVLGEKWKKMTAEEKEPYEAKARADKKRYKDQLSGYKNPQPMDVDSGNQSDSD* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01196 640 SMART hmgende2 555 625 IPR009071 -
Pte13g01196 640 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 556 624 IPR009071 -
Pte13g01196 640 FunFam FACT complex subunit SSRP1 96 179 - -
Pte13g01196 640 Gene3D - 201 337 - -
Pte13g01196 640 MobiDBLite consensus disorder prediction 1 20 - -
Pte13g01196 640 FunFam FACT complex subunit SSRP1 338 447 - -
Pte13g01196 640 MobiDBLite consensus disorder prediction 462 564 - -
Pte13g01196 640 Gene3D - 338 447 IPR011993 -
Pte13g01196 640 Pfam POB3-like N-terminal PH domain 7 96 IPR035417 -
Pte13g01196 640 Gene3D High mobility group box domain 539 634 IPR036910 -
Pte13g01196 640 FunFam Fact complex subunit ssrp1 199 337 - -
Pte13g01196 640 SUPERFAMILY PH domain-like 205 439 - -
Pte13g01196 640 CDD PH2_SSRP1-like 341 440 - -
Pte13g01196 640 CDD PH1_SSRP1-like 205 339 - -
Pte13g01196 640 Pfam Histone chaperone Rttp106-like 349 438 IPR013719 -
Pte13g01196 640 CDD HMG-box_AtSSRP1 552 627 - -
Pte13g01196 640 SUPERFAMILY HMG-box 543 625 IPR036910 -
Pte13g01196 640 Gene3D - 103 179 IPR038167 -
Pte13g01196 640 PANTHER FACT COMPLEX SUBUNIT SSRP1 6 609 - -
Pte13g01196 640 Pfam HMG (high mobility group) box 556 624 IPR009071 -
Pte13g01196 640 FunFam FACT complex subunit SSRP1 1 93 - -
Pte13g01196 640 SMART Rtt106_2 347 440 IPR013719 -
Pte13g01196 640 MobiDBLite consensus disorder prediction 508 547 - -
Pte13g01196 640 MobiDBLite consensus disorder prediction 597 620 - -
Pte13g01196 640 Pfam Structure-specific recognition protein (SSRP1) 106 174 IPR024954 -
Pte13g01196 640 MobiDBLite consensus disorder prediction 597 640 - -
Pte13g01196 640 FunFam FACT complex subunit SSRP1 540 633 - -
Pte13g01196 640 MobiDBLite consensus disorder prediction 1 16 - -
Pte13g01196 640 MobiDBLite consensus disorder prediction 626 640 - -
Pte13g01196 640 PRINTS Structure-specific recognition protein signature 263 279 IPR000969 GO:0003677|GO:0005634
Pte13g01196 640 PRINTS Structure-specific recognition protein signature 240 256 IPR000969 GO:0003677|GO:0005634
Pte13g01196 640 PRINTS Structure-specific recognition protein signature 399 415 IPR000969 GO:0003677|GO:0005634
Pte13g01196 640 PRINTS Structure-specific recognition protein signature 218 234 IPR000969 GO:0003677|GO:0005634
Pte13g01196 640 PRINTS Structure-specific recognition protein signature 373 390 IPR000969 GO:0003677|GO:0005634
Pte13g01196 640 PRINTS Structure-specific recognition protein signature 328 341 IPR000969 GO:0003677|GO:0005634
Pte13g01196 640 PRINTS Structure-specific recognition protein signature 355 373 IPR000969 GO:0003677|GO:0005634
Pte13g01196 640 PRINTS Structure-specific recognition protein signature 415 433 IPR000969 GO:0003677|GO:0005634
Pte13g01196 640 Gene3D - 3 102 IPR011993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01196 Pte-Chr13 13352875 13357965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01196 552 624 ARID Transcription Factor Family AT1G04880 36.986 3.62e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Pte13g01196 Rtt106 2.2e-20 CL0266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01196 K09272 - cit:102622679 1033.86