Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01195 ATGGATTTGAATCATCTGATATCAGTGAAGGATGAAATGGACATGGGAAGCCAACAGATGAGCTTGTTTGATGGCACTGATCACCGGTCCTTGGGAGGTTGCTGTGTCAAGAAACGAAGAAGAGAGCCTGCTCCAGTCAGTGGGGATTGTCAAACTAAGCAACAAAAGGATAATAATCAGACTTCTCTCAAGGGCAATGTAAAAAGAAGTTCGAAGTTTCGCGGAGTCAGCAGACACAGGTGGACTGGCCGATATGAAGCTCACTTGTGGGATAAGCTCACCTGGAATGTGACACAGAAGAAGAAAGGAAAGCAAGGAGCTTATGATAAGGAAGAAGCTGCTGCTAGGGCATATGATTTAGCCGCCATTAAGTACTGGGGAACCTCAACCTTCACTAATTTTCCGGTATCTGATTATGCCAAGGAGATTGAGATCATGCAAACAGTGACCAGAGAAGAATACTTAGCCTCTCTGCGAAGAAGGAGCAGTGGGTTTTCAAGGGGCGTATCAAAGTACAGAGGGGTGGCAAGGCATCACCATAATGGTAGATGGGAAGCAAGGATAGGAAGGGTTTTTGGGAACAAATATCTCTATCTAGGGACTTACAGTACACAAGAGGAAGCTGCTCGAGCTTACGACATTGCAGCAATTGAGTACAGAGGGATCCATGCTGTGACAAACTTTGATTTGAGCAGTTATATAAGATGGCTAAAGCCTGCTGGAGAAAAAGCCACAAACGAGCCTCCTCCTCCTCCTCCTCCGGAACCTCAACCTGAAGAGCGCCGGGCACTCCCCAGCCTCACTGAGTTTATTCCAACTAAATCCAGATTCTCTTTATTCAATGGTGATCCCTTTGAACCAGAATGCTTACATTTATCTCAAAAGCTAGATGGCTTCCAAAACTGTAATGCCTCGCCTAGCTCATGCAAAAAGACCTCTCCAACGGCACTGGGACTCCTCTACCGCTCTTCCGTGTTTCGAGAACTGGTTGAAAATAATCCAAACAGTACCGACGGTGAAATGGATTTGGGAGCCGCAAAGCTTCAATTTCCAAATGTGAATGATGATGATTTTGGTGACATATTTTACGAGGGAATTGATGATATCCCATTTGCCTGCAACAGAGATGGCATACCTTTGCAAGAGAGAGAGTTCTCCATTTTGTAA 1167 0.4524 MDLNHLISVKDEMDMGSQQMSLFDGTDHRSLGGCCVKKRRREPAPVSGDCQTKQQKDNNQTSLKGNVKRSSKFRGVSRHRWTGRYEAHLWDKLTWNVTQKKKGKQGAYDKEEAAARAYDLAAIKYWGTSTFTNFPVSDYAKEIEIMQTVTREEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGIHAVTNFDLSSYIRWLKPAGEKATNEPPPPPPPEPQPEERRALPSLTEFIPTKSRFSLFNGDPFEPECLHLSQKLDGFQNCNASPSSCKKTSPTALGLLYRSSVFRELVENNPNSTDGEMDLGAAKLQFPNVNDDDFGDIFYEGIDDIPFACNRDGIPLQEREFSIL* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01195 388 MobiDBLite consensus disorder prediction 42 71 - -
Pte13g01195 388 PRINTS Ethylene responsive element binding protein signature 73 84 IPR001471 GO:0003700|GO:0006355
Pte13g01195 388 PRINTS Ethylene responsive element binding protein signature 211 231 IPR001471 GO:0003700|GO:0006355
Pte13g01195 388 ProSiteProfiles AP2/ERF domain profile. 171 229 IPR001471 GO:0003700|GO:0006355
Pte13g01195 388 ProSiteProfiles AP2/ERF domain profile. 72 135 IPR001471 GO:0003700|GO:0006355
Pte13g01195 388 Pfam AP2 domain 71 127 IPR001471 GO:0003700|GO:0006355
Pte13g01195 388 Pfam AP2 domain 170 221 IPR001471 GO:0003700|GO:0006355
Pte13g01195 388 MobiDBLite consensus disorder prediction 241 260 - -
Pte13g01195 388 MobiDBLite consensus disorder prediction 48 68 - -
Pte13g01195 388 MobiDBLite consensus disorder prediction 244 260 - -
Pte13g01195 388 CDD AP2 170 231 IPR001471 GO:0003700|GO:0006355
Pte13g01195 388 SMART rav1_2 171 235 IPR001471 GO:0003700|GO:0006355
Pte13g01195 388 SMART rav1_2 72 141 IPR001471 GO:0003700|GO:0006355
Pte13g01195 388 SUPERFAMILY DNA-binding domain 71 137 IPR016177 GO:0003677
Pte13g01195 388 Gene3D AP2/ERF domain 71 137 IPR036955 GO:0003700|GO:0006355
Pte13g01195 388 Gene3D AP2/ERF domain 170 231 IPR036955 GO:0003700|GO:0006355
Pte13g01195 388 FunFam AP2-like ethylene-responsive transcription factor 170 231 - -
Pte13g01195 388 SUPERFAMILY DNA-binding domain 170 231 IPR016177 GO:0003677
Pte13g01195 388 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 54 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01195 Pte-Chr13 13348405 13350419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01195 68 233 AP2-EREBP Transcription Factor Family AT5G57390 68.047 2.49e-78 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pte13g01195 AP2 6.3e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01195 - - qsa:O6P43_004517 430.639