Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01194 ATGGCCTTGTCAGCAAGGATTAGCATAGTTTTTCTTGTGTCATTTGCCATTACAATCCCATGCCTACATGCTGGCATTGCTGAATATGACGATTACTTGAAGAAAGAAGCAGCCAATGCCCAAGAAGCTTCCCTTGAAGCCTATGATCCCCACCCAGAAAATATCACTGATGAATTCAACGCACAGGTTCGAAGGATCACCTTGTCTGAAGAGGGCAACAGCACAAGGAGAAACTTGGGTTCTAAGAAATACAAAGGACCATGCAAGGCAACCAACCCAATTGACATTTGCTGGCGATGCAAGGGAGATTGGTCTAAAGACCGAAAGAAATTAGCAAAATGTGTTATGGGGTTTGGGCATAAGACCACTGGCGGACTCAAAGGGAGGTACTATGTGGTCACTGAATCTTCAGACAAAAATGTTGTGAACCCGAGACCAGGAACTCTTCGCCATGCCGTGCAGCAGAAGGAACCTTTGTGGATCATCTTTGCTAGAAGCATGATGATTAAACTGACAAAAGAGCTGTTGGTGAGTAGTGATAAGACTATTGATGGTCGCGGGGCCAATGTGCAGATTGCTCATGGTGCTGGTATTAGTGTTCAGTTTGCTAAGAATGTTATTATTCATAATCTTCGTATCCATGACACTGTTAGAACGGAAGGTGGTCTTATTAGGGACTCAGCGAGTCATGTTGGTATAAGGACGACCGCTGACGGAGATGGTATTAGCATCTTTGCTTCTTCAAACATTTGGATCGATCATATTTCAATGTCTAATTGCGCTGATGGCCTCATCGATGTGGTACAAGGTTCTACAGGAGTCACCATATCAAATTGTCACTTCACCAAACACAACGATGTGATGCTTTTTGGTGCCAGTGACACTAACAGTATGGATAAAATAATGCAAATCACCGTAGCATTCAACCATTTTGGCAAAGGCTTAATACAAAGGATGCCTAGATGCAGGTGGGGATTCTTCCATGTTGTAAACAATGACTACACACATTGGCTTATGTACGCCATTGGTGGTAGCTCTGGCCCAACCATTATCAGCCAAGGCAACCGTTTCATTGCTCCTCCTAATCCTGCAGCAAATGAGATAACACATAGACACTATGCTCCACCAGCAGTGTGGAAGAAGTGGCAATGGATATCACAGAAGGATCTATTGATGAATGGTGCAAAGTTCATCCAATCTGGACCTCCTCTGAAAAAGAATGCTTTCGCCAATAATAAACAAATGATCACCCCCCAGGATGGAACAGCCGTGACATGGCTTACAAGGTTTTCAGGAGCAATCAAGTGTGTCCCAGGGAAACCTTGCTAG 1329 0.4409 MALSARISIVFLVSFAITIPCLHAGIAEYDDYLKKEAANAQEASLEAYDPHPENITDEFNAQVRRITLSEEGNSTRRNLGSKKYKGPCKATNPIDICWRCKGDWSKDRKKLAKCVMGFGHKTTGGLKGRYYVVTESSDKNVVNPRPGTLRHAVQQKEPLWIIFARSMMIKLTKELLVSSDKTIDGRGANVQIAHGAGISVQFAKNVIIHNLRIHDTVRTEGGLIRDSASHVGIRTTADGDGISIFASSNIWIDHISMSNCADGLIDVVQGSTGVTISNCHFTKHNDVMLFGASDTNSMDKIMQITVAFNHFGKGLIQRMPRCRWGFFHVVNNDYTHWLMYAIGGSSGPTIISQGNRFIAPPNPAANEITHRHYAPPAVWKKWQWISQKDLLMNGAKFIQSGPPLKKNAFANNKQMITPQDGTAVTWLTRFSGAIKCVPGKPC* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01194 442 PANTHER PECTATE LYASE 18-RELATED 40 440 IPR045032 GO:0030570
Pte13g01194 442 Pfam Pectate lyase 175 357 IPR002022 -
Pte13g01194 442 SUPERFAMILY Pectin lyase-like 77 436 IPR011050 -
Pte13g01194 442 SMART amb_all 166 363 IPR002022 -
Pte13g01194 442 Pfam Pectate lyase, N terminus 26 79 IPR007524 GO:0030570
Pte13g01194 442 Gene3D - 91 435 IPR012334 -
Pte13g01194 442 PRINTS Pollen allergen Amb family signature 238 259 IPR018082 -
Pte13g01194 442 PRINTS Pollen allergen Amb family signature 340 359 IPR018082 -
Pte13g01194 442 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Pte13g01194 442 PRINTS Pollen allergen Amb family signature 114 131 IPR018082 -
Pte13g01194 442 PRINTS Pollen allergen Amb family signature 138 163 IPR018082 -
Pte13g01194 442 PRINTS Pollen allergen Amb family signature 174 190 IPR018082 -
Pte13g01194 442 PRINTS Pollen allergen Amb family signature 413 436 IPR018082 -
Pte13g01194 442 PRINTS Pollen allergen Amb family signature 382 406 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01194 Pte-Chr13 13235045 13236937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01194 1 443 Polysaccharide Lyase AT5G15110 55.907 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01194 K01728 - qsa:O6P43_004519 635.95