Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01187 AGTAGCAGAAAGGAAGAAGAGCGAAATGAAAAGATTATTAGAGGGCTTATGAAGCTTCCTCCGAATCGAAGATGTATCAACTGTAACATTCTGGGTCCTCAGTATGTATGTACGGACTTTTGGACTTTCATTTGTATGACTTGCAGTGGGATACACCGGGAGTTCACCCATCGCGTGAAATCTGTATCTATGGCAAAGTTCACCTCACAAGAAGTTCAGGCACTTCAAAATGGTGGCAACCAGCGAGCAAGAGACATATATTTGAAAGATTGGGACTTTCAAACGCAGCGATTGCCTATTAGCAGTAATGTGGAGAAGGTAAGAGAGTTCATCAAGATTGTGTATGTTGATAGAAGATATGCGAGAGGGAAGGCCTCTGACAAACCCCCCAGAGACACACAGAGCCCAACAATCCGTGCCGCAGAGACAAGGCGTGCCAGTTCTTATCATTCGTACTCTCAAAGTCCACCCTATGACGATCAATATGAAGATAGAAGATATGGAAAACAAGCTGCTGCACTTTCTAGAAAGTTTGGTTCAGATGGAGGCCGTCATGAGGGAAAGATGTCTAGCTTTATATGTAGTCCCGGTCGATTCAGTGATCAGTCATTTGAGGAAAGGTTTGCAATTGTTGAATCCGGTCAGAGTGTTCCTAACTATTCTGCTTGTAGTGAAGGTGACCCTTTCAAATAAGATGTACAATCTCCGAACTTTCACATGAAAAATGGTTTTAGTAGCCCATTAAAACAGCCTTTTGGGGGCTTTTCAGGTGAAGATGTGGGGACTCAAGCAAGCATCTCATCCTTGGAAACAAATGGCAAGAAAGGTGGAGATGGGATTCCACATCCGCAGAGAATCACATCGTCTGGTAGTTTTGGATCATTGGAGAGCAATTCATTTTCCATGAAGTCCTATGGTTCAGGTGGTTTGGTAGATTTTTACTCAGAACCTGAGCAAGGGGCTTGCTCCCCTGGGGAAAATGACTCCAATTTGCTTCAGCAGCGAGGTCCTGCAAGATGTGATAGCTTGGATCCATCTAAAGCACCATCTGCACCACAAAGAGTCTCTTCAAGTTCAGCTATTAATTTATTTCAGCTACCTGCTTCCTCCCAGGTTTCATCCGTAGATGGCCTTCAACCCCCCTGGTTGACAGCCAGTGGGACACAAGCAGCATCTTTGGACCTCTTCGCTAATATGTCTCAGCAGCACTCAACTGCCACAGCCAATACAATTACAGAGCATGCTGTTCCTGAAAATGAAGGATGGGCTACATTTGACACACCTCAATCAACAGCATCTACTGCA 1305 0.4467 SSRKEEERNEKIIRGLMKLPPNRRCINCNILGPQYVCTDFWTFICMTCSGIHREFTHRVKSVSMAKFTSQEVQALQNGGNQRARDIYLKDWDFQTQRLPISSNVEKVREFIKIVYVDRRYARGKASDKPPRDTQSPTIRAAETRRASSYHSYSQSPPYDDQYEDRRYGKQAAALSRKFGSDGGRHEGKMSSFICSPGRFSDQSFEERFAIVESGQSVPNYSACSEGDPFKXDVQSPNFHMKNGFSSPLKQPFGGFSGEDVGTQASISSLETNGKKGGDGIPHPQRITSSGSFGSLESNSFSMKSYGSGGLVDFYSEPEQGACSPGENDSNLLQQRGPARCDSLDPSKAPSAPQRVSSSSAINLFQLPASSQVSSVDGLQPPWLTASGTQAASLDLFANMSQQHSTATANTITEHAVPENEGWATFDTPQSTASTA 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01187 435 PANTHER ARFGAP/RECO-RELATED 2 432 IPR044820 GO:0005096
Pte13g01187 435 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 133 - -
Pte13g01187 435 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Pte13g01187 435 MobiDBLite consensus disorder prediction 314 354 - -
Pte13g01187 435 SUPERFAMILY ArfGap/RecO-like zinc finger 8 122 IPR037278 -
Pte13g01187 435 MobiDBLite consensus disorder prediction 231 293 - -
Pte13g01187 435 SMART arf_gap_3 10 129 IPR001164 GO:0005096
Pte13g01187 435 MobiDBLite consensus disorder prediction 410 435 - -
Pte13g01187 435 MobiDBLite consensus disorder prediction 124 170 - -
Pte13g01187 435 CDD ArfGap_AGFG 10 122 - -
Pte13g01187 435 PRINTS HIV Rev interacting protein signature 59 80 IPR001164 GO:0005096
Pte13g01187 435 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Pte13g01187 435 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Pte13g01187 435 Gene3D Arf GTPase activating protein 1 130 IPR038508 -
Pte13g01187 435 MobiDBLite consensus disorder prediction 322 336 - -
Pte13g01187 435 MobiDBLite consensus disorder prediction 130 158 - -
Pte13g01187 435 Pfam Putative GTPase activating protein for Arf 11 122 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01187 Pte-Chr13 12920971 12924940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01187 13 87 C2H2 Transcription Factor Family AT4G05330 36.709 3.08e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01187 K15044 - qsa:O6P43_006248 490.345