Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01185 ATGGGGAGGCCTCCTTGCTGTGACAAAGTTGGCATCAAGAAGGGTCCATGGACTCCTGAGGAGGACATCATCCTTGTAACCTACATCCAAGAACATGGTCCTGGAAATTGGAGATCAGTGCCTACCAACACTGGCTTGCTGAGGTGTAGCAAAAGTTGCAGGCTGAGATGGACGAACTACCTTAGACCAGGAATCAAGAGAGGGAATTTCACTCCTCATGAAGAAGGGATGATAATTCACTTGCAAGCTCTGCTGGGTAACAAATGGGCAGCCATAGCTTCCTATCTTCCTCAAAGAACAGATAATGATATAAAGAACTATTGGAACACCCATCTAAAAAAGAAACTGAAGAAATTTCAATCAGCTTTCGACGCACATCACTTGGCAAATGACCACTCAACCACAGCCACTCATGATCAGCTTGGTTCCAAGAGCTTCAGTGAGAGAAGAAACTCAGATGTCGTCCACAATAATGCTTCATCCCTTACACTTAGTCAATCTTCTACATATGCTTCAAGCACTGAGAACATCTCTAGGCTCTTAGAAGGTTGGATGAGATCTTCTCCAAAGGGTACTGAAGAGAAAGTACCTCCAACCACCACCAGCAACATCGCTGCTGTAGACAGGAAGACAGGCAATTCTGCAATGATGCTTGATGTTGATTCCTATCAAGCAAAAACTGAACAAGAAGCAGGCTGTGATATGGTTTCTCGCGAGGAGCTGGGTTCGATTTTATCGTTTGACCAGAATCTGAACAATGCTGCGTGGGACAAGTCCACTTGTGATTCGGTGGCTTTGAAGGCAGGATGTGAAGTTGCTGGTGAGGACATAGATAGGGATGAGAAAGGATTAGAGGCAGTACTTGAGAAGAACAAAGAAAGATCTGAAGACAGTAGTAGTACAACTCCACCCTTATCCTTCATTGAGAAATGGCTGTTGGATGAATGTGTGGGACACGTAGAGGACATAATGGAGTTGTCTCCGATGTTCTAA 993 0.4471 MGRPPCCDKVGIKKGPWTPEEDIILVTYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQSAFDAHHLANDHSTTATHDQLGSKSFSERRNSDVVHNNASSLTLSQSSTYASSTENISRLLEGWMRSSPKGTEEKVPPTTTSNIAAVDRKTGNSAMMLDVDSYQAKTEQEAGCDMVSREELGSILSFDQNLNNAAWDKSTCDSVALKAGCEVAGEDIDRDEKGLEAVLEKNKERSEDSSSTTPPLSFIEKWLLDECVGHVEDIMELSPMF* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01185 330 CDD SANT 69 112 IPR001005 -
Pte13g01185 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Pte13g01185 330 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pte13g01185 330 CDD SANT 16 61 IPR001005 -
Pte13g01185 330 MobiDBLite consensus disorder prediction 130 151 - -
Pte13g01185 330 Gene3D - 13 66 - -
Pte13g01185 330 SMART sant 13 63 IPR001005 -
Pte13g01185 330 SMART sant 66 114 IPR001005 -
Pte13g01185 330 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pte13g01185 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Pte13g01185 330 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pte13g01185 330 FunFam Transcription factor MYB60 68 140 - -
Pte13g01185 330 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pte13g01185 330 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pte13g01185 330 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 221 - -
Pte13g01185 330 Gene3D - 68 142 - -
Pte13g01185 330 FunFam MYB-related transcription factor 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01185 Pte-Chr13 12912293 12914048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01185 1 150 MYB Transcription Factor Family AT5G62470 73.684 1.82e-80 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte13g01185 Myb_DNA-binding 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01185 K09422 - qsa:O6P43_006245 422.165