Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01182 ATGAACTCACAACAACCCCATAATACCGGAGATGGCTTTCATGGGTGTCAAGATATGAGCTTTCTTGCTCCATCTGTAGATCCCTTTCATTGTCTTCAAGGCAACCAACTCCCTGCATCTTGCTCCTATGGGGTTATGGTTCATTGTGAGGGGAGAGAGGCTAACAGATCCAAAACTGGTTTTCAGACTTTAGGCCAGCCACTGGATAACGAGAGCAGGGAATACGAAAGAAGTACGGAAAAGAGTGAAGGCTTCACAGTGGTGGAGGGAAAAGACTTCATTTTTAAACTTGACGAGGAAGTGGAAGTCAAAAGCTTTGTAGACGGGAAAAAAGCCCACACTAAGCTCTGTGCCAGAGGCCATTGGAGGCCAGCTGAAGATGCAAAACTGAGAGATCTTGTTGCTCAGTTTGGCCCTCAAAACTGGAACTTGATAGCTGAGCATCTCGAAGGAAGATCAGGTAAAAGTTGCAGATTGAGATGGTTTAATCAATTAGATCCTAGGATTAACAAAGGGGCTTTTTCTGAAGAAGAGGAAGAAAGACTTTTAGCTGTTCATAGACTATATGGTAACAAATGGGCAATGATTTCCAGGCTCTTTCCTGGTAGGACTGACAATGCTGTCAAGAACCATTGGCATGTGATCATGGCCAGGAAACACAGAGAGCAATCCTGTATTTACAGGAGGGGAAAACCCAATCCTACTGAGTTCCTTTCTAAGGGATTAAATTTGACTTTATCTAACAATGCATCTACTGAACCAACCATCTCTAGTACCTTGGATGAATCTGCCTCCACATGCACTGATCTCTCTCTTAGTCCATCTGTAGCCAAAGGAAATCATAATTTTTTGATCGGTTCTGGTTCATCTCAACGTCACCCAAATCATGGATCATCTATGGGGTTTTCTGTTGAGTTGGTGAAGGGAAGTAGTGATTCTGGTTTTGAAAAGTTTCATGGCACCTGGAGCAGCAGTAGCTGCCTTGACCCTGCTATCCAGGGAAAGTTCATATTGGGGGACCAATCTGGTTATTCCGATTCATACTCTTCAGATGTTTCTGTATCGGAGTCAGTTGCTACCAACAGGTTCAATCTCTCAATAACAGCAGGAAAAGAACAAGTGAAAGCGGTCGTTCACACGGGTTTCATCGATTTTCTTGGGGTAGGAGCTACATAA 1176 0.4371 MNSQQPHNTGDGFHGCQDMSFLAPSVDPFHCLQGNQLPASCSYGVMVHCEGREANRSKTGFQTLGQPLDNESREYERSTEKSEGFTVVEGKDFIFKLDEEVEVKSFVDGKKAHTKLCARGHWRPAEDAKLRDLVAQFGPQNWNLIAEHLEGRSGKSCRLRWFNQLDPRINKGAFSEEEEERLLAVHRLYGNKWAMISRLFPGRTDNAVKNHWHVIMARKHREQSCIYRRGKPNPTEFLSKGLNLTLSNNASTEPTISSTLDESASTCTDLSLSPSVAKGNHNFLIGSGSSQRHPNHGSSMGFSVELVKGSSDSGFEKFHGTWSSSSCLDPAIQGKFILGDQSGYSDSYSSDVSVSESVATNRFNLSITAGKEQVKAVVHTGFIDFLGVGAT* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01182 391 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 166 220 IPR017930 -
Pte13g01182 391 CDD SANT 173 213 IPR001005 -
Pte13g01182 391 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 119 165 IPR017930 -
Pte13g01182 391 Pfam Myb-like DNA-binding domain 122 182 - -
Pte13g01182 391 SMART sant 170 218 IPR001005 -
Pte13g01182 391 SMART sant 118 167 IPR001005 -
Pte13g01182 391 ProSiteProfiles Myb-like domain profile. 166 216 IPR001005 -
Pte13g01182 391 Gene3D - 119 170 - -
Pte13g01182 391 PANTHER MYB PROTEIN-RELATED 119 262 - -
Pte13g01182 391 ProSiteProfiles Myb-like domain profile. 119 165 IPR001005 -
Pte13g01182 391 FunFam MYB transcription factor 119 170 - -
Pte13g01182 391 SUPERFAMILY Homeodomain-like 119 212 IPR009057 -
Pte13g01182 391 Gene3D - 173 229 - -
Pte13g01182 391 CDD SANT 122 163 IPR001005 -
Pte13g01182 391 MobiDBLite consensus disorder prediction 58 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01182 Pte-Chr13 12862465 12864431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01182 113 274 MYB Transcription Factor Family AT5G17800 64.497 5.01e-69 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte13g01182 Myb_DNA-bind_6 7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01182 K09422 - jre:109000849 370.163