Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01176 ATGGTTTTCTGTAATCATTGTTTAAAGAATGGCCCTGGAATTCGACCAGAGGATGGTCCTCTATGTTGTAATTTTTGTGGGAAGGTTTTGGAGGATTATAATTTCTCGACGGAGGCAACTTTTTTTAAAAATGCTGCCGGGCAGAGCCAAATGTCCGGCAATTTTGTGAGGACCGTACAGAGTGAGTACTCTTCATCGCGTCAACGAACATTGGATAAAGCTTATGAAGAGATAAGTTATATAAATTCTGCTCTTGGGGTGGGTGAGGATCATTTATCAAGCCAAGCTTTGGCATTCTATAGAATAGCACTTGAGCGGAATTTCACGAAGGGACGTAGAGCTGAGCAAGTACAAGCAGCTTGTCTTTACATCGCATTTAGGGAAAATAACAAGCCATACCTTCTTATTGATTTTTCAAATTATCTGCGAACAAATGTGTATGTCCTAGGTGCAGTTTTTCTGCAGCTTTGCAAAGTGTTAAGGCTTGAAGAGCATCCTATTGTTCAGAAACCTGTTGATCCTAGTCTTTTTATTACTAAATATACTAACAATCTGTTGAAAGAGAGGAACTTGGATGTCACGAAGACTGCATTGAGTATTATAGCTAGCATGAAACGAGATTGGATGCAGACAGGAAGAAAACCGAGTGGCTTATGTGGTGCGGCTTTATACATCTCTGCACTTGCACATGGCTTCAGGTGTTCCAAATCTGACATTCTAAGGCTTGTACATGTATGCGAAGCAACATTGACAAAGCGATTAGTGGAATTTGAGAATACCGAGTCTGCCAGCTTGACGATTGAAGAATTAAATGCAATGGCAAAAGAGCATGAGAGAAGTTCAGTCGGAAAACCACAATCTGCATCTGAAGAATCTAAATCGAAAGATCTACTCTGTGAGCACAAGGGTAGTGGCGTCCCTCATTTTGCTCTTGGTTTGTGTGAAAGTTGTTACAATGAATTTGTAAAACTCTCTGGAGGACTTGATGGGGGTGTGGATCCGCCAGCTTTCCAGCGTGCTGAAAAGGAAAGGTCGGCAAAATCATTTGCTGAGGATGCTACTGCTGAATCAACCGAAGTCACAAGAGCATCTGATGGTTCCCGCAGAGACAAAAACGAGGAAATAACTGCACCTCATGGTGCTAACTCAGAGCATTTTCCCTCTGCCTATTACAATGATACAAATATCAAGGATCCTGAAGAATCTGAAAGTCTTTCTGACATTGATGATCTTGAGGTTGATGCCTATCTTCACAATGAGGAAGAGAAACATTACAAAAAGATTATATGGGAGGAAATGAACAGGGAGTATCTTGAGGAGCAAGCAGCAAAGGAGGCAGCTGCAGCTGCTGCAAAGGAAGCGTTTGAGGCCAATTTTAGGAATTGTCCAGAAGAACTACAAAAGGCAAAAGAACTTGCTGCAGCTACTGCAGAAGCTGTGGCTAAGCTTAGAAAGGAGAAGCAACGTGAAAGACTTCGAGATGCAAAAAATGCACCTCCAGCTCAAACTCCGGCAGAGGCTACACAGCAAATGCTAAAGAAAAAGAGGTTGAGTAACAAAGTCAATTATGATGTCCTGGAGAAACTATTCGAGGAATCTGGGACCAAGAAGATGCGTAATGGATCAGAGTCGGATAATCATGGAATTCATGAAAGCAAGAAGCACGAGAAAGAGAGTGCAAACGACGGTGATGAATCGGAATTAGCTGGTTTTGCAGATGAAGGGGATCAAGGCGATACTTACGGAACTGTGTTATACGATGATAATGGAGACGTTATCGACTACGACAATGATGACTATGGCTATGATGGGTACTGA 1818 0.4213 MVFCNHCLKNGPGIRPEDGPLCCNFCGKVLEDYNFSTEATFFKNAAGQSQMSGNFVRTVQSEYSSSRQRTLDKAYEEISYINSALGVGEDHLSSQALAFYRIALERNFTKGRRAEQVQAACLYIAFRENNKPYLLIDFSNYLRTNVYVLGAVFLQLCKVLRLEEHPIVQKPVDPSLFITKYTNNLLKERNLDVTKTALSIIASMKRDWMQTGRKPSGLCGAALYISALAHGFRCSKSDILRLVHVCEATLTKRLVEFENTESASLTIEELNAMAKEHERSSVGKPQSASEESKSKDLLCEHKGSGVPHFALGLCESCYNEFVKLSGGLDGGVDPPAFQRAEKERSAKSFAEDATAESTEVTRASDGSRRDKNEEITAPHGANSEHFPSAYYNDTNIKDPEESESLSDIDDLEVDAYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKEAFEANFRNCPEELQKAKELAAATAEAVAKLRKEKQRERLRDAKNAPPAQTPAEATQQMLKKKRLSNKVNYDVLEKLFEESGTKKMRNGSESDNHGIHESKKHEKESANDGDESELAGFADEGDQGDTYGTVLYDDNGDVIDYDNDDYGYDGY* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01176 605 MobiDBLite consensus disorder prediction 532 605 - -
Pte13g01176 605 Pfam Transcription factor TFIIB repeat 68 157 IPR013150 GO:0017025
Pte13g01176 605 Pfam Transcription factor TFIIB repeat 169 259 IPR013150 GO:0017025
Pte13g01176 605 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 2 520 IPR000812 GO:0006352|GO:0070897
Pte13g01176 605 Gene3D Single helix bin 398 448 - -
Pte13g01176 605 Gene3D - 173 265 - -
Pte13g01176 605 MobiDBLite consensus disorder prediction 334 406 - -
Pte13g01176 605 CDD CYCLIN_TFIIIB90_rpt2 170 260 - -
Pte13g01176 605 MobiDBLite consensus disorder prediction 336 350 - -
Pte13g01176 605 Coils Coil 466 486 - -
Pte13g01176 605 MobiDBLite consensus disorder prediction 275 295 - -
Pte13g01176 605 MobiDBLite consensus disorder prediction 591 605 - -
Pte13g01176 605 Pfam Brf1-like TBP-binding domain 406 531 IPR011665 -
Pte13g01176 605 SUPERFAMILY Cyclin-like 73 163 IPR036915 -
Pte13g01176 605 Gene3D - 63 165 - -
Pte13g01176 605 SMART cyclin_7 76 158 IPR013763 -
Pte13g01176 605 SMART cyclin_7 176 259 IPR013763 -
Pte13g01176 605 FunFam Transcription factor IIIB 90 kDa subunit 63 166 - -
Pte13g01176 605 FunFam Cyclin/Brf1-like TBP-binding protein 398 448 - -
Pte13g01176 605 FunFam Transcription factor IIIB subunit 173 262 - -
Pte13g01176 605 MobiDBLite consensus disorder prediction 532 564 - -
Pte13g01176 605 PRINTS Transcription initiation factor IIB signature 119 138 IPR000812 GO:0006352|GO:0070897
Pte13g01176 605 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Pte13g01176 605 PRINTS Transcription initiation factor IIB signature 213 229 IPR000812 GO:0006352|GO:0070897
Pte13g01176 605 SUPERFAMILY Cyclin-like 172 268 IPR036915 -
Pte13g01176 605 MobiDBLite consensus disorder prediction 362 378 - -
Pte13g01176 605 CDD CYCLIN_TFIIIB90_rpt1 70 160 - -
Pte13g01176 605 MobiDBLite consensus disorder prediction 483 515 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01176 1 515 Inorganic Solute Cotransporters AT2G01280 44.045 1.02e-121 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01176 K15196 - gmx:100817609 669.077