Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01133 ATGAGTGAGACGAATAATGAACTGGGATTGAACTTGAGTTTGGGATTAGGAGGAAATCAAAATCCTTTGAAGCTGAACGTCTTCATGGCTCCCCCAAATGACCACAAGACTTCTTGGAATGACTTGTTTCGCTTATCTGATGGAAGCTCTGGGACGAGGTCACTGCTTAGAGGGATTGATGTGAATGCAGTTCCATCTATTGTAGATGGTGATGAGAATAATGGGGCTTCTTCACCAAACAGCACGTTATCTAGTGTAAGTGGAAAGCGTGGAGAAAGAGAACGAAATAGCGACGAAAATGAAGTTGAGCGAGCTTCAACCTCACACGGAAGTGACGATGAAGATGGTAATGGTGGAGGTGACACTTCCAGAAAAAAGCTTAGACTCTCTAAGGAGCAAGCCTTGGTGCTAGAGGAGACATTCAAGGATCATAGTACATTGAATCCTAAGCAAAAGCAAGCACTAGCGAAGCAGTTGAACTTAAGGCCTAGACAAGTAGAGGTGTGGTTTCAGAACAGAAGGGCAAGGACAAAGCTGAAGCAGACAGAAGTGGACTGTGAATACTTGAAGAAATGCTGTGAGAATTTGACTGCAGAGAACAGGAGGTTGCAGAAAGAGGTGCAAGACCTCAGGGCATTGAACTTATCTCCACAGCTTTACATGCATCCGAACCCACCTACTACACTCACAATGTGTCCTTCATGTGAGCGTGTGGCCGTTTCTTCCTCATCAGCATCATCTTCATCTTCATCTGCAGTTGCTTTGTCTTCCATGGTCGGCTCAAACTGTCGGTTAACCAGTCCAAATGTCCAGCGGCCTATGCCCATAAGCCCATGGGCTGCTTTGCCGATACATCGTCGTCCATTTGATGGTCAATCCACTCAACCATAA 891 0.4568 MSETNNELGLNLSLGLGGNQNPLKLNVFMAPPNDHKTSWNDLFRLSDGSSGTRSLLRGIDVNAVPSIVDGDENNGASSPNSTLSSVSGKRGERERNSDENEVERASTSHGSDDEDGNGGGDTSRKKLRLSKEQALVLEETFKDHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCENLTAENRRLQKEVQDLRALNLSPQLYMHPNPPTTLTMCPSCERVAVSSSSASSSSSSAVALSSMVGSNCRLTSPNVQRPMPISPWAALPIHRRPFDGQSTQP* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01133 296 SMART halz 180 223 IPR003106 GO:0006355|GO:0043565
Pte13g01133 296 Gene3D - 117 185 - -
Pte13g01133 296 MobiDBLite consensus disorder prediction 69 127 - -
Pte13g01133 296 Pfam Homeobox associated leucine zipper 180 213 IPR003106 GO:0006355|GO:0043565
Pte13g01133 296 ProSitePatterns 'Homeobox' domain signature. 155 178 IPR017970 GO:0000981|GO:0006355
Pte13g01133 296 Coils Coil 186 213 - -
Pte13g01133 296 ProSiteProfiles 'Homeobox' domain profile. 120 180 IPR001356 GO:0003677
Pte13g01133 296 FunFam Homeobox-leucine zipper protein 18 107 185 - -
Pte13g01133 296 MobiDBLite consensus disorder prediction 71 87 - -
Pte13g01133 296 MobiDBLite consensus disorder prediction 88 127 - -
Pte13g01133 296 SUPERFAMILY Homeodomain-like 108 181 IPR009057 -
Pte13g01133 296 CDD homeodomain 124 181 IPR001356 GO:0003677
Pte13g01133 296 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 10 252 - -
Pte13g01133 296 Pfam Homeodomain 124 178 IPR001356 GO:0003677
Pte13g01133 296 Pfam HD-ZIP protein N terminus 1 94 IPR006712 GO:0005634
Pte13g01133 296 SMART HOX_1 122 184 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01133 Pte-Chr13 12046783 12048888 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01133 32 291 Homeobox Transcription Factor Family AT3G60390 63.669 1.86e-104 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pte13g01133 HD-ZIP_N 9.8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01133 K09338 - qsa:O6P43_026962 372.474